miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 54238 0.67 0.875774
Target:  5'- cGCGGCGcGCGcucaUGUGCA-GCgCGCCc- -3'
miRNA:   3'- -CGCCGCaCGU----ACAUGUaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 87114 0.74 0.488922
Target:  5'- cGCGGCGUuguagaagggccGCggGUACGcgagcUGCUCGCCGa -3'
miRNA:   3'- -CGCCGCA------------CGuaCAUGU-----ACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 133127 0.74 0.486979
Target:  5'- aCGGCGUGCGcgucucccugcgGUGCGcGCUCGCCGc -3'
miRNA:   3'- cGCCGCACGUa-----------CAUGUaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 121068 0.73 0.579486
Target:  5'- cGCGGUGUGCGcgGcGCcgGCggcCGCCAGc -3'
miRNA:   3'- -CGCCGCACGUa-CaUGuaCGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 18807 0.71 0.683406
Target:  5'- aGCGGCGgcggGCAUGauugcgcucuCGUGCUCGCg-- -3'
miRNA:   3'- -CGCCGCa---CGUACau--------GUACGAGCGguc -5'
23588 5' -54.9 NC_005261.1 + 63731 0.67 0.875774
Target:  5'- aGCGGCGUGCGcaUGgccgcgGCGgcguagGC-CGCCGu -3'
miRNA:   3'- -CGCCGCACGU--ACa-----UGUa-----CGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 104663 0.7 0.754027
Target:  5'- cGCuGGCGgGCGUGUGC-UGCggcagCGCCuGg -3'
miRNA:   3'- -CG-CCGCaCGUACAUGuACGa----GCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 101473 0.66 0.915608
Target:  5'- cCGGCGUGCAgggGCGccaGCUgGCCuGg -3'
miRNA:   3'- cGCCGCACGUacaUGUa--CGAgCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 128347 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 80684 0.66 0.92694
Target:  5'- gGC-GCGUGCgacGUGUGCccGUGCgccgCGCCGu -3'
miRNA:   3'- -CGcCGCACG---UACAUG--UACGa---GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 19800 0.66 0.92694
Target:  5'- cGCGGCG-GCGUccGCGgcgGCgacaGCCAGc -3'
miRNA:   3'- -CGCCGCaCGUAcaUGUa--CGag--CGGUC- -5'
23588 5' -54.9 NC_005261.1 + 72025 0.66 0.915608
Target:  5'- gGCGGCGUGC-UGgc---GCUgGCCGa -3'
miRNA:   3'- -CGCCGCACGuACauguaCGAgCGGUc -5'
23588 5' -54.9 NC_005261.1 + 126341 0.74 0.508544
Target:  5'- cGCGGCGggcGCGcGUGCGggcggGCUCGCCc- -3'
miRNA:   3'- -CGCCGCa--CGUaCAUGUa----CGAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 52815 0.68 0.844656
Target:  5'- gGCGGCGcGCGcgcgcGUGCucggGCUCGCgGGc -3'
miRNA:   3'- -CGCCGCaCGUa----CAUGua--CGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 36278 0.68 0.844656
Target:  5'- gGCGGcCGUGCc----CcgGCUCGCCAa -3'
miRNA:   3'- -CGCC-GCACGuacauGuaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 106468 0.68 0.836358
Target:  5'- cGCGGCGcGCAgGUACAcGUgCGCCu- -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 89196 0.68 0.827868
Target:  5'- gGCGGC-UGCcUGcGCGUGCcCGCCGc -3'
miRNA:   3'- -CGCCGcACGuACaUGUACGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 126044 0.7 0.724235
Target:  5'- gGCGGCGcUGCAUGgugGCGgcggcGCUgGCCu- -3'
miRNA:   3'- -CGCCGC-ACGUACa--UGUa----CGAgCGGuc -5'
23588 5' -54.9 NC_005261.1 + 72570 0.7 0.744195
Target:  5'- gGCGGCGcUGCGc--GCcgGCgcgCGCCAGa -3'
miRNA:   3'- -CGCCGC-ACGUacaUGuaCGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 4216 0.68 0.852753
Target:  5'- cGCGGCGgcgGCGUaGUugAggguguaGC-CGCCGGg -3'
miRNA:   3'- -CGCCGCa--CGUA-CAugUa------CGaGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.