miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 72025 0.66 0.915608
Target:  5'- gGCGGCGUGC-UGgc---GCUgGCCGa -3'
miRNA:   3'- -CGCCGCACGuACauguaCGAgCGGUc -5'
23588 5' -54.9 NC_005261.1 + 80629 0.66 0.915016
Target:  5'- cGCGGCGUGCGccgccagGUggcACAUcgacgcgcucaacGCggCGCCGGa -3'
miRNA:   3'- -CGCCGCACGUa------CA---UGUA-------------CGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 14662 0.66 0.913823
Target:  5'- aGCGGUGUacgggggccgGCGUGUgacggugcgcgaggGCAcGCUCGCgCGGu -3'
miRNA:   3'- -CGCCGCA----------CGUACA--------------UGUaCGAGCG-GUC- -5'
23588 5' -54.9 NC_005261.1 + 82992 0.66 0.909571
Target:  5'- cGCGGCGgcUGCG-GUGC-UGCcgcccUCGCCGc -3'
miRNA:   3'- -CGCCGC--ACGUaCAUGuACG-----AGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 15142 0.66 0.90329
Target:  5'- cGCGGCGaaaugGCGUG-GCcgGC-CGCCu- -3'
miRNA:   3'- -CGCCGCa----CGUACaUGuaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 15185 0.66 0.90329
Target:  5'- aGCGGCGgGCAgagaagggGUGCcUGCU-GCCGa -3'
miRNA:   3'- -CGCCGCaCGUa-------CAUGuACGAgCGGUc -5'
23588 5' -54.9 NC_005261.1 + 67332 0.67 0.896766
Target:  5'- cGUGGCGcGCAaGUGCAcggccaugUGCacCGCCGGc -3'
miRNA:   3'- -CGCCGCaCGUaCAUGU--------ACGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 136909 0.67 0.890003
Target:  5'- cGCGGCG-GCGUcccGgagcGCGUGCcgcCGCCGGc -3'
miRNA:   3'- -CGCCGCaCGUA---Ca---UGUACGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 128290 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 128347 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 80684 0.66 0.92694
Target:  5'- gGC-GCGUGCgacGUGUGCccGUGCgccgCGCCGu -3'
miRNA:   3'- -CGcCGCACG---UACAUG--UACGa---GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 134220 0.68 0.819193
Target:  5'- gGCGGCcUGCGUGgcCAUGagcCGCCGc -3'
miRNA:   3'- -CGCCGcACGUACauGUACga-GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 65469 0.68 0.827868
Target:  5'- cGCGGCcgccGUGC-UGgGCAUGCggccCGCCAu -3'
miRNA:   3'- -CGCCG----CACGuACaUGUACGa---GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 89196 0.68 0.827868
Target:  5'- gGCGGC-UGCcUGcGCGUGCcCGCCGc -3'
miRNA:   3'- -CGCCGcACGuACaUGUACGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 106468 0.68 0.836358
Target:  5'- cGCGGCGcGCAgGUACAcGUgCGCCu- -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 36278 0.68 0.844656
Target:  5'- gGCGGcCGUGCc----CcgGCUCGCCAa -3'
miRNA:   3'- -CGCC-GCACGuacauGuaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 52815 0.68 0.844656
Target:  5'- gGCGGCGcGCGcgcgcGUGCucggGCUCGCgGGc -3'
miRNA:   3'- -CGCCGCaCGUa----CAUGua--CGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 4216 0.68 0.852753
Target:  5'- cGCGGCGgcgGCGUaGUugAggguguaGC-CGCCGGg -3'
miRNA:   3'- -CGCCGCa--CGUA-CAugUa------CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 54068 0.66 0.910186
Target:  5'- cGCGGCGgcggugguggcagggGCGUGgcCGagGCcCGCCAGc -3'
miRNA:   3'- -CGCCGCa--------------CGUACauGUa-CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 19800 0.66 0.92694
Target:  5'- cGCGGCG-GCGUccGCGgcgGCgacaGCCAGc -3'
miRNA:   3'- -CGCCGCaCGUAcaUGUa--CGag--CGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.