miRNA display CGI


Results 101 - 120 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 15142 0.66 0.90329
Target:  5'- cGCGGCGaaaugGCGUG-GCcgGC-CGCCu- -3'
miRNA:   3'- -CGCCGCa----CGUACaUGuaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 82992 0.66 0.909571
Target:  5'- cGCGGCGgcUGCG-GUGC-UGCcgcccUCGCCGc -3'
miRNA:   3'- -CGCCGC--ACGUaCAUGuACG-----AGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 121223 0.66 0.909571
Target:  5'- cGCGGCc-GCGUGcgACAUGCUgGCg-- -3'
miRNA:   3'- -CGCCGcaCGUACa-UGUACGAgCGguc -5'
23588 5' -54.9 NC_005261.1 + 54068 0.66 0.910186
Target:  5'- cGCGGCGgcggugguggcagggGCGUGgcCGagGCcCGCCAGc -3'
miRNA:   3'- -CGCCGCa--------------CGUACauGUa-CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 14662 0.66 0.913823
Target:  5'- aGCGGUGUacgggggccgGCGUGUgacggugcgcgaggGCAcGCUCGCgCGGu -3'
miRNA:   3'- -CGCCGCA----------CGUACA--------------UGUaCGAGCG-GUC- -5'
23588 5' -54.9 NC_005261.1 + 101473 0.66 0.915608
Target:  5'- cCGGCGUGCAgggGCGccaGCUgGCCuGg -3'
miRNA:   3'- cGCCGCACGUacaUGUa--CGAgCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 79308 0.67 0.890003
Target:  5'- gGCGGCGUGCGcgGgcgcGCugGUGCgcgCGCUGGc -3'
miRNA:   3'- -CGCCGCACGUa-Ca---UG--UACGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 59063 0.67 0.890003
Target:  5'- uCGGCGcGC-UGgcCAcggggcugcuggUGCUCGCCGGg -3'
miRNA:   3'- cGCCGCaCGuACauGU------------ACGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 29728 0.67 0.889313
Target:  5'- cGCGGCGUggccGCggGUagcgucgcggcgcGCGUGCgCGCCGa -3'
miRNA:   3'- -CGCCGCA----CGuaCA-------------UGUACGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 52815 0.68 0.844656
Target:  5'- gGCGGCGcGCGcgcgcGUGCucggGCUCGCgGGc -3'
miRNA:   3'- -CGCCGCaCGUa----CAUGua--CGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 128290 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 31980 0.67 0.860643
Target:  5'- aGCGGCGgcgGCGgcccgGUAgGgcgcgGCggccgCGCCAGg -3'
miRNA:   3'- -CGCCGCa--CGUa----CAUgUa----CGa----GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 82850 0.67 0.860643
Target:  5'- aGCGGCGgcgGCAgcgGCG-GCggGCCAGg -3'
miRNA:   3'- -CGCCGCa--CGUacaUGUaCGagCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 127992 0.67 0.860643
Target:  5'- cGCGGCG-GCGaGUGCGcggGCcCGCCuGg -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUa--CGaGCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 31906 0.67 0.868319
Target:  5'- gGCGGCGggGcCGUGgcuCAcgacggaagacUGCUCGCCGa -3'
miRNA:   3'- -CGCCGCa-C-GUACau-GU-----------ACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 28106 0.67 0.875774
Target:  5'- gGCGGgGUGCGUcaGCGUcaggacggGCgCGCCGGg -3'
miRNA:   3'- -CGCCgCACGUAcaUGUA--------CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 3217 0.67 0.875774
Target:  5'- cGCGGCcgcGUGCGg--GCccGCcgCGCCAGg -3'
miRNA:   3'- -CGCCG---CACGUacaUGuaCGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 55510 0.67 0.875774
Target:  5'- cGCGGCuGgacgGCGUGgacUGCcUGCUCGUgGGg -3'
miRNA:   3'- -CGCCG-Ca---CGUAC---AUGuACGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 58123 0.67 0.875774
Target:  5'- cGCGGCGcccaaGCcgGUACcgcgGCgcgcgCGCCGGu -3'
miRNA:   3'- -CGCCGCa----CGuaCAUGua--CGa----GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 90795 0.67 0.875774
Target:  5'- -gGGCGccUGUcgG-ACGUGUUCGCCAc -3'
miRNA:   3'- cgCCGC--ACGuaCaUGUACGAGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.