miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 82992 0.66 0.909571
Target:  5'- cGCGGCGgcUGCG-GUGC-UGCcgcccUCGCCGc -3'
miRNA:   3'- -CGCCGC--ACGUaCAUGuACG-----AGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 73922 0.66 0.909571
Target:  5'- gGCGGCccgacUGCGUGUGCcUGCUCcgGCUu- -3'
miRNA:   3'- -CGCCGc----ACGUACAUGuACGAG--CGGuc -5'
23588 5' -54.9 NC_005261.1 + 104223 0.66 0.909571
Target:  5'- cGCGGCGcGCAc---CGUGCccuccagCGCCAGa -3'
miRNA:   3'- -CGCCGCaCGUacauGUACGa------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 98816 0.66 0.907713
Target:  5'- gGCGGCGUGCcggaagacggggggGUgggcGUACAgcgGgUCGCCGc -3'
miRNA:   3'- -CGCCGCACG--------------UA----CAUGUa--CgAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 33747 0.66 0.90329
Target:  5'- cGCGGCGccgggGCcgG-GCccGCUCGCgGGg -3'
miRNA:   3'- -CGCCGCa----CGuaCaUGuaCGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 91711 0.66 0.90329
Target:  5'- cCGGC-UGCAag-GCcgGCUCGCCGc -3'
miRNA:   3'- cGCCGcACGUacaUGuaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 15185 0.66 0.90329
Target:  5'- aGCGGCGgGCAgagaagggGUGCcUGCU-GCCGa -3'
miRNA:   3'- -CGCCGCaCGUa-------CAUGuACGAgCGGUc -5'
23588 5' -54.9 NC_005261.1 + 15142 0.66 0.90329
Target:  5'- cGCGGCGaaaugGCGUG-GCcgGC-CGCCu- -3'
miRNA:   3'- -CGCCGCa----CGUACaUGuaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 15065 0.67 0.896766
Target:  5'- cGCGGCGggGUcgGggguCAgGCUCGCCc- -3'
miRNA:   3'- -CGCCGCa-CGuaCau--GUaCGAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 43373 0.67 0.896766
Target:  5'- uGCGGCG-GCAUcggccucgcgGUGCcgGCaccguccaggCGCCGGg -3'
miRNA:   3'- -CGCCGCaCGUA----------CAUGuaCGa---------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 59794 0.67 0.896766
Target:  5'- gGCGGCGggcgGCAg--GCcgGCguggCGCCGc -3'
miRNA:   3'- -CGCCGCa---CGUacaUGuaCGa---GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 105249 0.67 0.896766
Target:  5'- uGCGGCG-GCAUccgcgcgACAgGCUCGgCGGg -3'
miRNA:   3'- -CGCCGCaCGUAca-----UGUaCGAGCgGUC- -5'
23588 5' -54.9 NC_005261.1 + 67332 0.67 0.896766
Target:  5'- cGUGGCGcGCAaGUGCAcggccaugUGCacCGCCGGc -3'
miRNA:   3'- -CGCCGCaCGUaCAUGU--------ACGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 88455 0.67 0.8961
Target:  5'- cGCGccGCGUgaGCGUGUGggcgggcCGUGCcgCGCCGGa -3'
miRNA:   3'- -CGC--CGCA--CGUACAU-------GUACGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 39118 0.67 0.8961
Target:  5'- cCGGUGUaCGUGUACGaguuuucUGC-CGCCGGc -3'
miRNA:   3'- cGCCGCAcGUACAUGU-------ACGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 38494 0.67 0.894762
Target:  5'- gGCGGCGUcgacuggaGCGUcGUAUAaggcgcgcgcuggcUGCgcgCGCCGGg -3'
miRNA:   3'- -CGCCGCA--------CGUA-CAUGU--------------ACGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 79308 0.67 0.890003
Target:  5'- gGCGGCGUGCGcgGgcgcGCugGUGCgcgCGCUGGc -3'
miRNA:   3'- -CGCCGCACGUa-Ca---UG--UACGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 16160 0.67 0.890003
Target:  5'- cGCgGGCGUGCGcgacccGUACAUGauCUCgGCCAu -3'
miRNA:   3'- -CG-CCGCACGUa-----CAUGUAC--GAG-CGGUc -5'
23588 5' -54.9 NC_005261.1 + 136909 0.67 0.890003
Target:  5'- cGCGGCG-GCGUcccGgagcGCGUGCcgcCGCCGGc -3'
miRNA:   3'- -CGCCGCaCGUA---Ca---UGUACGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 59063 0.67 0.890003
Target:  5'- uCGGCGcGC-UGgcCAcggggcugcuggUGCUCGCCGGg -3'
miRNA:   3'- cGCCGCaCGuACauGU------------ACGAGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.