miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 128091 0.66 0.988076
Target:  5'- aGCGGGUUAAcGGGCG--AGCgGCG-Cg -3'
miRNA:   3'- aCGCCCAGUU-UCUGCauUUGgCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 86950 0.66 0.988076
Target:  5'- gGCuGGUCAAAGAcCGUGAAgCacaCGUCc -3'
miRNA:   3'- aCGcCCAGUUUCU-GCAUUUgGc--GCAG- -5'
23589 3' -51.6 NC_005261.1 + 75503 0.66 0.988076
Target:  5'- cGCGGGgcgCuGGAGGCGcacGCCGUGgUCg -3'
miRNA:   3'- aCGCCCa--G-UUUCUGCauuUGGCGC-AG- -5'
23589 3' -51.6 NC_005261.1 + 69770 0.66 0.988076
Target:  5'- gGCGGcGcCGGGGAC-UGAGCCGC-UCc -3'
miRNA:   3'- aCGCC-CaGUUUCUGcAUUUGGCGcAG- -5'
23589 3' -51.6 NC_005261.1 + 99713 0.66 0.988076
Target:  5'- cGCcacGGUCGcgcGCGU-GGCCGCGUCa -3'
miRNA:   3'- aCGc--CCAGUuucUGCAuUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 3414 0.66 0.986477
Target:  5'- gGCGGGcUGAAGagcGCGcGGGCCaGCGUCc -3'
miRNA:   3'- aCGCCCaGUUUC---UGCaUUUGG-CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 111431 0.66 0.986477
Target:  5'- gGCGGGcaAGAGACGgacGACCgGCGa- -3'
miRNA:   3'- aCGCCCagUUUCUGCau-UUGG-CGCag -5'
23589 3' -51.6 NC_005261.1 + 1857 0.66 0.986477
Target:  5'- cGcCGGGccCGAAGACGc--GCCGCGa- -3'
miRNA:   3'- aC-GCCCa-GUUUCUGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 135100 0.66 0.986477
Target:  5'- gGCGGcGgagCGcGAGGCGgaccCCGCGUCu -3'
miRNA:   3'- aCGCC-Ca--GU-UUCUGCauuuGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 14188 0.66 0.986477
Target:  5'- cGCGGGUCAggcccagggaggAAGACGggcgcaccAACgCGCG-Cg -3'
miRNA:   3'- aCGCCCAGU------------UUCUGCau------UUG-GCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 86593 0.66 0.986477
Target:  5'- gGCGGcgccGUCcuuGGCGUcgGCCGCGcCg -3'
miRNA:   3'- aCGCC----CAGuuuCUGCAuuUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 110297 0.66 0.986477
Target:  5'- gGCGGG-CGccugcgccgccGAGuACGgcAACCGCGcCg -3'
miRNA:   3'- aCGCCCaGU-----------UUC-UGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 121212 0.66 0.986477
Target:  5'- cGCGGGcCGGAGACugcagcACCGCa-- -3'
miRNA:   3'- aCGCCCaGUUUCUGcauu--UGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 70203 0.66 0.984902
Target:  5'- cGgGGGUUGAAGACGggcaugcuggaguugGcGCCGCG-Cg -3'
miRNA:   3'- aCgCCCAGUUUCUGCa--------------UuUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 102209 0.66 0.984719
Target:  5'- gUGCGGGUUGAacgcaAGcACGgccucgauGGCCGcCGUCg -3'
miRNA:   3'- -ACGCCCAGUU-----UC-UGCau------UUGGC-GCAG- -5'
23589 3' -51.6 NC_005261.1 + 84956 0.66 0.984719
Target:  5'- gGCGGccgCcGAGGCGUcgGgCGCGUCc -3'
miRNA:   3'- aCGCCca-GuUUCUGCAuuUgGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 75236 0.66 0.984719
Target:  5'- aGCGGGcgCAuguacGugGgcAACCGCG-Cg -3'
miRNA:   3'- aCGCCCa-GUuu---CugCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 15029 0.66 0.984159
Target:  5'- gGCGGGUgcCGGGGGCGUagcggggggggucgGggUCGCGg- -3'
miRNA:   3'- aCGCCCA--GUUUCUGCA--------------UuuGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 106093 0.66 0.982792
Target:  5'- aGCGGcGaUCGc-GACGUcgGCCGgCGUCg -3'
miRNA:   3'- aCGCC-C-AGUuuCUGCAuuUGGC-GCAG- -5'
23589 3' -51.6 NC_005261.1 + 92809 0.66 0.982792
Target:  5'- cGcCGGGcgCGcGGGCGUgGGACCGCG-Cg -3'
miRNA:   3'- aC-GCCCa-GUuUCUGCA-UUUGGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.