Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 110297 | 0.66 | 0.986477 |
Target: 5'- gGCGGG-CGccugcgccgccGAGuACGgcAACCGCGcCg -3' miRNA: 3'- aCGCCCaGU-----------UUC-UGCauUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 86593 | 0.66 | 0.986477 |
Target: 5'- gGCGGcgccGUCcuuGGCGUcgGCCGCGcCg -3' miRNA: 3'- aCGCC----CAGuuuCUGCAuuUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 14188 | 0.66 | 0.986477 |
Target: 5'- cGCGGGUCAggcccagggaggAAGACGggcgcaccAACgCGCG-Cg -3' miRNA: 3'- aCGCCCAGU------------UUCUGCau------UUG-GCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 135100 | 0.66 | 0.986477 |
Target: 5'- gGCGGcGgagCGcGAGGCGgaccCCGCGUCu -3' miRNA: 3'- aCGCC-Ca--GU-UUCUGCauuuGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 3414 | 0.66 | 0.986477 |
Target: 5'- gGCGGGcUGAAGagcGCGcGGGCCaGCGUCc -3' miRNA: 3'- aCGCCCaGUUUC---UGCaUUUGG-CGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 100963 | 0.67 | 0.975909 |
Target: 5'- cGCGcGGUCucgugGAAGGCGcccAgCGCGUCg -3' miRNA: 3'- aCGC-CCAG-----UUUCUGCauuUgGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 97056 | 0.67 | 0.975909 |
Target: 5'- gGCGGGgggCGGcGGGCacgauCCGCGUCg -3' miRNA: 3'- aCGCCCa--GUU-UCUGcauuuGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 87713 | 0.67 | 0.975909 |
Target: 5'- gUGCGagcuuaucgaGGUCcAGGugG---GCCGCGUCg -3' miRNA: 3'- -ACGC----------CCAGuUUCugCauuUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 10947 | 0.67 | 0.975909 |
Target: 5'- cGCGGGgcccgccccCAGAcGCGUGGGCCGCc-- -3' miRNA: 3'- aCGCCCa--------GUUUcUGCAUUUGGCGcag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 28762 | 0.67 | 0.973219 |
Target: 5'- cGCGGc-CGGGGGCGccUGGGCCGCGg- -3' miRNA: 3'- aCGCCcaGUUUCUGC--AUUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 74351 | 0.67 | 0.973219 |
Target: 5'- cGCGGcGgcggaAGGGGCG---GCCGCGUCc -3' miRNA: 3'- aCGCC-Cag---UUUCUGCauuUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 104857 | 0.67 | 0.975909 |
Target: 5'- cGCGGGUCAcgcacGCGUcGAUgucaGCGUCg -3' miRNA: 3'- aCGCCCAGUuuc--UGCAuUUGg---CGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 134398 | 0.67 | 0.975909 |
Target: 5'- aGCGGGaUCAggAAGguguGCGUGAACUGCu-- -3' miRNA: 3'- aCGCCC-AGU--UUC----UGCAUUUGGCGcag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 136583 | 0.67 | 0.975909 |
Target: 5'- gGCGGGcgCAGAGACGcccGGCgcaGCGUg -3' miRNA: 3'- aCGCCCa-GUUUCUGCau-UUGg--CGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 87901 | 0.67 | 0.975909 |
Target: 5'- gGCGGGcC--GGGCGU--ACCGUGUg -3' miRNA: 3'- aCGCCCaGuuUCUGCAuuUGGCGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 94765 | 0.67 | 0.975909 |
Target: 5'- -cUGGuUCGAGGACGUGGcGCCGCG-Cg -3' miRNA: 3'- acGCCcAGUUUCUGCAUU-UGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 63024 | 0.67 | 0.977914 |
Target: 5'- cGCGGG-CGccggcgcccgcggcGAGGCGgucgcgcagcagcGCCGCGUCg -3' miRNA: 3'- aCGCCCaGU--------------UUCUGCauu----------UGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 129565 | 0.67 | 0.978395 |
Target: 5'- gGCGGGcgUAGAGGaggaGgcGGCCGCG-Cg -3' miRNA: 3'- aCGCCCa-GUUUCUg---CauUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 98739 | 0.67 | 0.978395 |
Target: 5'- cGCGGccgCGcGGGCGUuGGCCGCG-Cg -3' miRNA: 3'- aCGCCca-GUuUCUGCAuUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 50384 | 0.67 | 0.970318 |
Target: 5'- cGCGcGUCGAAGuACGUcgcGAAggccggcagccCCGCGUCg -3' miRNA: 3'- aCGCcCAGUUUC-UGCA---UUU-----------GGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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