miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 129565 0.67 0.978395
Target:  5'- gGCGGGcgUAGAGGaggaGgcGGCCGCG-Cg -3'
miRNA:   3'- aCGCCCa-GUUUCUg---CauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 63024 0.67 0.977914
Target:  5'- cGCGGG-CGccggcgcccgcggcGAGGCGgucgcgcagcagcGCCGCGUCg -3'
miRNA:   3'- aCGCCCaGU--------------UUCUGCauu----------UGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 94765 0.67 0.975909
Target:  5'- -cUGGuUCGAGGACGUGGcGCCGCG-Cg -3'
miRNA:   3'- acGCCcAGUUUCUGCAUU-UGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 87901 0.67 0.975909
Target:  5'- gGCGGGcC--GGGCGU--ACCGUGUg -3'
miRNA:   3'- aCGCCCaGuuUCUGCAuuUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 136583 0.67 0.975909
Target:  5'- gGCGGGcgCAGAGACGcccGGCgcaGCGUg -3'
miRNA:   3'- aCGCCCa-GUUUCUGCau-UUGg--CGCAg -5'
23589 3' -51.6 NC_005261.1 + 134398 0.67 0.975909
Target:  5'- aGCGGGaUCAggAAGguguGCGUGAACUGCu-- -3'
miRNA:   3'- aCGCCC-AGU--UUC----UGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 104857 0.67 0.975909
Target:  5'- cGCGGGUCAcgcacGCGUcGAUgucaGCGUCg -3'
miRNA:   3'- aCGCCCAGUuuc--UGCAuUUGg---CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 100963 0.67 0.975909
Target:  5'- cGCGcGGUCucgugGAAGGCGcccAgCGCGUCg -3'
miRNA:   3'- aCGC-CCAG-----UUUCUGCauuUgGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 66932 0.68 0.956469
Target:  5'- --gGGcGUCGAAGGCG---GCCGCGUa -3'
miRNA:   3'- acgCC-CAGUUUCUGCauuUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 47097 0.68 0.960281
Target:  5'- gGCGGGcCAGAGcccgucCGUGaggacGugCGCGUCc -3'
miRNA:   3'- aCGCCCaGUUUCu-----GCAU-----UugGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 23946 0.68 0.956469
Target:  5'- gGCGGGuUCGGGGuCGUcgGCaCGCGg- -3'
miRNA:   3'- aCGCCC-AGUUUCuGCAuuUG-GCGCag -5'
23589 3' -51.6 NC_005261.1 + 33890 0.68 0.954876
Target:  5'- gGCGcGUCAccGGGGCGcgcguauaaagcgGGGCCGCGUCu -3'
miRNA:   3'- aCGCcCAGU--UUCUGCa------------UUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 136809 0.68 0.952415
Target:  5'- gGCGGGcUCGuAGcCGUAGACgGCGcCc -3'
miRNA:   3'- aCGCCC-AGUuUCuGCAUUUGgCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 60120 0.68 0.960281
Target:  5'- cGCGGG-C----ACGUAGGCCGCGa- -3'
miRNA:   3'- aCGCCCaGuuucUGCAUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 82603 0.68 0.960281
Target:  5'- cGCuGGUCcGGGcGCGUGAGCCGCc-- -3'
miRNA:   3'- aCGcCCAGuUUC-UGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 118218 0.68 0.960281
Target:  5'- cGCGGGgCGcuGACGgccgcGGCCGCGg- -3'
miRNA:   3'- aCGCCCaGUuuCUGCau---UUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 129659 0.68 0.963856
Target:  5'- gGCGGcGgCAGGGGCG-GGACCggggGCGUCg -3'
miRNA:   3'- aCGCC-CaGUUUCUGCaUUUGG----CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 1745 0.68 0.963856
Target:  5'- cGCGGGccCAGGcGCGUGGccACCGUGUa -3'
miRNA:   3'- aCGCCCa-GUUUcUGCAUU--UGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 13968 0.68 0.963856
Target:  5'- cGCGcGGUCAGGGACGacGAACUcccUGUCg -3'
miRNA:   3'- aCGC-CCAGUUUCUGCa-UUUGGc--GCAG- -5'
23589 3' -51.6 NC_005261.1 + 95676 0.68 0.948115
Target:  5'- cGCGGGUguGAGcACGUGcacGAgCGCGa- -3'
miRNA:   3'- aCGCCCAguUUC-UGCAU---UUgGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.