miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 129659 0.68 0.963856
Target:  5'- gGCGGcGgCAGGGGCG-GGACCggggGCGUCg -3'
miRNA:   3'- aCGCC-CaGUUUCUGCaUUUGG----CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 118218 0.68 0.960281
Target:  5'- cGCGGGgCGcuGACGgccgcGGCCGCGg- -3'
miRNA:   3'- aCGCCCaGUuuCUGCau---UUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 82603 0.68 0.960281
Target:  5'- cGCuGGUCcGGGcGCGUGAGCCGCc-- -3'
miRNA:   3'- aCGcCCAGuUUC-UGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 57888 0.69 0.928394
Target:  5'- gGcCGGcaCGGGGACGgccACCGCGUCg -3'
miRNA:   3'- aC-GCCcaGUUUCUGCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 108919 0.69 0.928394
Target:  5'- cGCgGGGUCGGGGcccagcacgcccACGcacGCCGCGUCc -3'
miRNA:   3'- aCG-CCCAGUUUC------------UGCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 22074 0.69 0.928394
Target:  5'- gGCGGGgcUCGAGGGgGc--GCCGCGUg -3'
miRNA:   3'- aCGCCC--AGUUUCUgCauuUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 115642 0.69 0.922825
Target:  5'- cGuCGGGggGAAGAgGggcGCCGCGUCu -3'
miRNA:   3'- aC-GCCCagUUUCUgCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 12431 0.69 0.922825
Target:  5'- gGCGGaGggcuugcGGCGUcgGCCGCGUCg -3'
miRNA:   3'- aCGCC-Caguuu--CUGCAuuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 30391 0.69 0.917
Target:  5'- cGCGGGUgGAGGugGaGGACaUGCGg- -3'
miRNA:   3'- aCGCCCAgUUUCugCaUUUG-GCGCag -5'
23589 3' -51.6 NC_005261.1 + 76187 0.69 0.917
Target:  5'- aGCGGGgccuGGGCGUGcugaugcagcAGCCGCGcCu -3'
miRNA:   3'- aCGCCCaguuUCUGCAU----------UUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 111724 0.69 0.933187
Target:  5'- cGCGGGUCGacGAGcgcguguACGUGAAgUGCGg- -3'
miRNA:   3'- aCGCCCAGU--UUC-------UGCAUUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 73874 0.69 0.933707
Target:  5'- aGCGGGUCGuGGGCGUGucCCugaGCuUCg -3'
miRNA:   3'- aCGCCCAGUuUCUGCAUuuGG---CGcAG- -5'
23589 3' -51.6 NC_005261.1 + 127766 0.69 0.938764
Target:  5'- gGCGGGcgCGAAGACGcccGGCUGC-UCg -3'
miRNA:   3'- aCGCCCa-GUUUCUGCau-UUGGCGcAG- -5'
23589 3' -51.6 NC_005261.1 + 91405 0.69 0.938764
Target:  5'- cGCGcccGG-CGAGGACGUGGAgCGCGa- -3'
miRNA:   3'- aCGC---CCaGUUUCUGCAUUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 104808 0.69 0.938764
Target:  5'- aGCGGGUCccgcuccgcAgcGGCGUcgcgGGGCCGCGcCa -3'
miRNA:   3'- aCGCCCAG---------UuuCUGCA----UUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 41686 0.69 0.938764
Target:  5'- cGCGGuGU-GAAGA-GUaGAGCCGCGUCc -3'
miRNA:   3'- aCGCC-CAgUUUCUgCA-UUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 34499 0.69 0.933707
Target:  5'- aGUGGGUCGAGGGCGcucUGGugggcaccuucGCCGUGa- -3'
miRNA:   3'- aCGCCCAGUUUCUGC---AUU-----------UGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 27323 0.69 0.933707
Target:  5'- cGCGGGUCAAGGGgGcgGAACgGgGg- -3'
miRNA:   3'- aCGCCCAGUUUCUgCa-UUUGgCgCag -5'
23589 3' -51.6 NC_005261.1 + 108878 0.69 0.933707
Target:  5'- aGCGGGU---GGACGacGGCCGCGc- -3'
miRNA:   3'- aCGCCCAguuUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 82068 0.7 0.910919
Target:  5'- cGcCGGGUCGAcGGCGU--GCCGCa-- -3'
miRNA:   3'- aC-GCCCAGUUuCUGCAuuUGGCGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.