miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 127663 0.7 0.897999
Target:  5'- cGCGGGUUcgGGGCG-GGACgGCGg- -3'
miRNA:   3'- aCGCCCAGuuUCUGCaUUUGgCGCag -5'
23589 3' -51.6 NC_005261.1 + 102300 0.7 0.904585
Target:  5'- cGCGGGUCGuAGcCGcgcGCCGCGg- -3'
miRNA:   3'- aCGCCCAGUuUCuGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 67597 0.7 0.910919
Target:  5'- gGCGGGauucagccCGAAGGCGgacGCCGCGcCa -3'
miRNA:   3'- aCGCCCa-------GUUUCUGCauuUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 82068 0.7 0.910919
Target:  5'- cGcCGGGUCGAcGGCGU--GCCGCa-- -3'
miRNA:   3'- aC-GCCCAGUUuCUGCAuuUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 124190 0.7 0.910919
Target:  5'- cGUGGGgggacgCGuccgguGGCGUGAACUGCGUg -3'
miRNA:   3'- aCGCCCa-----GUuu----CUGCAUUUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 68127 0.71 0.845218
Target:  5'- cGCGGGcCGcGGcGCGgcGACCGCGcCg -3'
miRNA:   3'- aCGCCCaGUuUC-UGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 98913 0.71 0.845218
Target:  5'- aGCGGGUCGgcGGgGUcgGCUGCGg- -3'
miRNA:   3'- aCGCCCAGUuuCUgCAuuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 72240 0.71 0.845218
Target:  5'- gGCGGuGcgcgCAAAgucGACGUGAACCGCGa- -3'
miRNA:   3'- aCGCC-Ca---GUUU---CUGCAUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 444 0.71 0.853435
Target:  5'- -cCGGGaCGGGGACGggGGCCGCGa- -3'
miRNA:   3'- acGCCCaGUUUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 138115 0.71 0.853435
Target:  5'- -cCGGGaCGGGGACGggGGCCGCGa- -3'
miRNA:   3'- acGCCCaGUUUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 73591 0.71 0.861438
Target:  5'- cGCGG--CGGAGGCGgcGGCCGCGa- -3'
miRNA:   3'- aCGCCcaGUUUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 108733 0.71 0.861438
Target:  5'- cGCGGGcCAgcGGCGgc-GCCGCGg- -3'
miRNA:   3'- aCGCCCaGUuuCUGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 134213 0.71 0.869218
Target:  5'- cGCGGGUCGc-GGCGgccGGCaGCGUCg -3'
miRNA:   3'- aCGCCCAGUuuCUGCau-UUGgCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 29648 0.72 0.810354
Target:  5'- cGCcGGUCGGGGACGccauGGCCGCG-Ca -3'
miRNA:   3'- aCGcCCAGUUUCUGCau--UUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 59797 0.72 0.819353
Target:  5'- gGCGGGcggCAGGccGGCGUGGcGCCGCGUg -3'
miRNA:   3'- aCGCCCa--GUUU--CUGCAUU-UGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 13100 0.72 0.819353
Target:  5'- gGCGGGcucggcUCGGGGGCGUcggcGGCCGCGg- -3'
miRNA:   3'- aCGCCC------AGUUUCUGCAu---UUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 35453 0.72 0.828169
Target:  5'- cGCGGGUCu-AGGCGcGGcgcGCgCGCGUCc -3'
miRNA:   3'- aCGCCCAGuuUCUGCaUU---UG-GCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 110803 0.72 0.836793
Target:  5'- gGCGGGcgaggaggCGGGGGCGgacgGGGCCGCGg- -3'
miRNA:   3'- aCGCCCa-------GUUUCUGCa---UUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 121110 0.72 0.836793
Target:  5'- gUGCGGGUCcucuAGGGCGcgGAGgCGCGg- -3'
miRNA:   3'- -ACGCCCAGu---UUCUGCa-UUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 119103 0.73 0.791846
Target:  5'- gGaCGGGagacccUUAAAGAUGUAGGCCGCGg- -3'
miRNA:   3'- aC-GCCC------AGUUUCUGCAUUUGGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.