miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 73591 0.71 0.861438
Target:  5'- cGCGG--CGGAGGCGgcGGCCGCGa- -3'
miRNA:   3'- aCGCCcaGUUUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 444 0.71 0.853435
Target:  5'- -cCGGGaCGGGGACGggGGCCGCGa- -3'
miRNA:   3'- acGCCCaGUUUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 72240 0.71 0.845218
Target:  5'- gGCGGuGcgcgCAAAgucGACGUGAACCGCGa- -3'
miRNA:   3'- aCGCC-Ca---GUUU---CUGCAUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 68127 0.71 0.845218
Target:  5'- cGCGGGcCGcGGcGCGgcGACCGCGcCg -3'
miRNA:   3'- aCGCCCaGUuUC-UGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 98913 0.71 0.845218
Target:  5'- aGCGGGUCGgcGGgGUcgGCUGCGg- -3'
miRNA:   3'- aCGCCCAGUuuCUgCAuuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 108733 0.71 0.861438
Target:  5'- cGCGGGcCAgcGGCGgc-GCCGCGg- -3'
miRNA:   3'- aCGCCCaGUuuCUGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 67597 0.7 0.910919
Target:  5'- gGCGGGauucagccCGAAGGCGgacGCCGCGcCa -3'
miRNA:   3'- aCGCCCa-------GUUUCUGCauuUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 102300 0.7 0.904585
Target:  5'- cGCGGGUCGuAGcCGcgcGCCGCGg- -3'
miRNA:   3'- aCGCCCAGUuUCuGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 82068 0.7 0.910919
Target:  5'- cGcCGGGUCGAcGGCGU--GCCGCa-- -3'
miRNA:   3'- aC-GCCCAGUUuCUGCAuuUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 12749 0.7 0.891165
Target:  5'- gGCGGGcccggCGAGGuCGUAGGCgGCGg- -3'
miRNA:   3'- aCGCCCa----GUUUCuGCAUUUGgCGCag -5'
23589 3' -51.6 NC_005261.1 + 127663 0.7 0.897999
Target:  5'- cGCGGGUUcgGGGCG-GGACgGCGg- -3'
miRNA:   3'- aCGCCCAGuuUCUGCaUUUGgCGCag -5'
23589 3' -51.6 NC_005261.1 + 124190 0.7 0.910919
Target:  5'- cGUGGGgggacgCGuccgguGGCGUGAACUGCGUg -3'
miRNA:   3'- aCGCCCa-----GUuu----CUGCAUUUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 57888 0.69 0.928394
Target:  5'- gGcCGGcaCGGGGACGgccACCGCGUCg -3'
miRNA:   3'- aC-GCCcaGUUUCUGCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 127766 0.69 0.938764
Target:  5'- gGCGGGcgCGAAGACGcccGGCUGC-UCg -3'
miRNA:   3'- aCGCCCa-GUUUCUGCau-UUGGCGcAG- -5'
23589 3' -51.6 NC_005261.1 + 115642 0.69 0.922825
Target:  5'- cGuCGGGggGAAGAgGggcGCCGCGUCu -3'
miRNA:   3'- aC-GCCCagUUUCUgCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 30391 0.69 0.917
Target:  5'- cGCGGGUgGAGGugGaGGACaUGCGg- -3'
miRNA:   3'- aCGCCCAgUUUCugCaUUUG-GCGCag -5'
23589 3' -51.6 NC_005261.1 + 91405 0.69 0.938764
Target:  5'- cGCGcccGG-CGAGGACGUGGAgCGCGa- -3'
miRNA:   3'- aCGC---CCaGUUUCUGCAUUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 108919 0.69 0.928394
Target:  5'- cGCgGGGUCGGGGcccagcacgcccACGcacGCCGCGUCc -3'
miRNA:   3'- aCG-CCCAGUUUC------------UGCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 111724 0.69 0.933187
Target:  5'- cGCGGGUCGacGAGcgcguguACGUGAAgUGCGg- -3'
miRNA:   3'- aCGCCCAGU--UUC-------UGCAUUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 12431 0.69 0.922825
Target:  5'- gGCGGaGggcuugcGGCGUcgGCCGCGUCg -3'
miRNA:   3'- aCGCC-Caguuu--CUGCAuuUGGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.