Results 41 - 60 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 111724 | 0.69 | 0.933187 |
Target: 5'- cGCGGGUCGacGAGcgcguguACGUGAAgUGCGg- -3' miRNA: 3'- aCGCCCAGU--UUC-------UGCAUUUgGCGCag -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 22074 | 0.69 | 0.928394 |
Target: 5'- gGCGGGgcUCGAGGGgGc--GCCGCGUg -3' miRNA: 3'- aCGCCC--AGUUUCUgCauuUGGCGCAg -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 104808 | 0.69 | 0.938764 |
Target: 5'- aGCGGGUCccgcuccgcAgcGGCGUcgcgGGGCCGCGcCa -3' miRNA: 3'- aCGCCCAG---------UuuCUGCA----UUUGGCGCaG- -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 91405 | 0.69 | 0.938764 |
Target: 5'- cGCGcccGG-CGAGGACGUGGAgCGCGa- -3' miRNA: 3'- aCGC---CCaGUUUCUGCAUUUgGCGCag -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 27323 | 0.69 | 0.933707 |
Target: 5'- cGCGGGUCAAGGGgGcgGAACgGgGg- -3' miRNA: 3'- aCGCCCAGUUUCUgCa-UUUGgCgCag -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 108878 | 0.69 | 0.933707 |
Target: 5'- aGCGGGU---GGACGacGGCCGCGc- -3' miRNA: 3'- aCGCCCAguuUCUGCauUUGGCGCag -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 57888 | 0.69 | 0.928394 |
Target: 5'- gGcCGGcaCGGGGACGgccACCGCGUCg -3' miRNA: 3'- aC-GCCcaGUUUCUGCauuUGGCGCAG- -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 108919 | 0.69 | 0.928394 |
Target: 5'- cGCgGGGUCGGGGcccagcacgcccACGcacGCCGCGUCc -3' miRNA: 3'- aCG-CCCAGUUUC------------UGCauuUGGCGCAG- -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 136809 | 0.68 | 0.952415 |
Target: 5'- gGCGGGcUCGuAGcCGUAGACgGCGcCc -3' miRNA: 3'- aCGCCC-AGUuUCuGCAUUUGgCGCaG- -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 33890 | 0.68 | 0.954876 |
Target: 5'- gGCGcGUCAccGGGGCGcgcguauaaagcgGGGCCGCGUCu -3' miRNA: 3'- aCGCcCAGU--UUCUGCa------------UUUGGCGCAG- -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 23946 | 0.68 | 0.956469 |
Target: 5'- gGCGGGuUCGGGGuCGUcgGCaCGCGg- -3' miRNA: 3'- aCGCCC-AGUUUCuGCAuuUG-GCGCag -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 47097 | 0.68 | 0.960281 |
Target: 5'- gGCGGGcCAGAGcccgucCGUGaggacGugCGCGUCc -3' miRNA: 3'- aCGCCCaGUUUCu-----GCAU-----UugGCGCAG- -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 66932 | 0.68 | 0.956469 |
Target: 5'- --gGGcGUCGAAGGCG---GCCGCGUa -3' miRNA: 3'- acgCC-CAGUUUCUGCauuUGGCGCAg -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 60120 | 0.68 | 0.960281 |
Target: 5'- cGCGGG-C----ACGUAGGCCGCGa- -3' miRNA: 3'- aCGCCCaGuuucUGCAUUUGGCGCag -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 82603 | 0.68 | 0.960281 |
Target: 5'- cGCuGGUCcGGGcGCGUGAGCCGCc-- -3' miRNA: 3'- aCGcCCAGuUUC-UGCAUUUGGCGcag -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 118218 | 0.68 | 0.960281 |
Target: 5'- cGCGGGgCGcuGACGgccgcGGCCGCGg- -3' miRNA: 3'- aCGCCCaGUuuCUGCau---UUGGCGCag -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 129659 | 0.68 | 0.963856 |
Target: 5'- gGCGGcGgCAGGGGCG-GGACCggggGCGUCg -3' miRNA: 3'- aCGCC-CaGUUUCUGCaUUUGG----CGCAG- -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 1745 | 0.68 | 0.963856 |
Target: 5'- cGCGGGccCAGGcGCGUGGccACCGUGUa -3' miRNA: 3'- aCGCCCa-GUUUcUGCAUU--UGGCGCAg -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 13968 | 0.68 | 0.963856 |
Target: 5'- cGCGcGGUCAGGGACGacGAACUcccUGUCg -3' miRNA: 3'- aCGC-CCAGUUUCUGCa-UUUGGc--GCAG- -5' |
|||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 56146 | 0.68 | 0.963856 |
Target: 5'- cGCGGGcCGAGGgugGCGgcAGCgGCGg- -3' miRNA: 3'- aCGCCCaGUUUC---UGCauUUGgCGCag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home