miRNA display CGI


Results 61 - 80 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 129659 0.68 0.963856
Target:  5'- gGCGGcGgCAGGGGCG-GGACCggggGCGUCg -3'
miRNA:   3'- aCGCC-CaGUUUCUGCaUUUGG----CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 56146 0.68 0.963856
Target:  5'- cGCGGGcCGAGGgugGCGgcAGCgGCGg- -3'
miRNA:   3'- aCGCCCaGUUUC---UGCauUUGgCGCag -5'
23589 3' -51.6 NC_005261.1 + 13968 0.68 0.963856
Target:  5'- cGCGcGGUCAGGGACGacGAACUcccUGUCg -3'
miRNA:   3'- aCGC-CCAGUUUCUGCa-UUUGGc--GCAG- -5'
23589 3' -51.6 NC_005261.1 + 10947 0.67 0.975909
Target:  5'- cGCGGGgcccgccccCAGAcGCGUGGGCCGCc-- -3'
miRNA:   3'- aCGCCCa--------GUUUcUGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 87713 0.67 0.975909
Target:  5'- gUGCGagcuuaucgaGGUCcAGGugG---GCCGCGUCg -3'
miRNA:   3'- -ACGC----------CCAGuUUCugCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 94765 0.67 0.975909
Target:  5'- -cUGGuUCGAGGACGUGGcGCCGCG-Cg -3'
miRNA:   3'- acGCCcAGUUUCUGCAUU-UGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 63024 0.67 0.977914
Target:  5'- cGCGGG-CGccggcgcccgcggcGAGGCGgucgcgcagcagcGCCGCGUCg -3'
miRNA:   3'- aCGCCCaGU--------------UUCUGCauu----------UGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 129565 0.67 0.978395
Target:  5'- gGCGGGcgUAGAGGaggaGgcGGCCGCG-Cg -3'
miRNA:   3'- aCGCCCa-GUUUCUg---CauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 109673 0.67 0.978395
Target:  5'- cGCGGGUgCugagcggacgAGGGACGauGGCCGCGcCu -3'
miRNA:   3'- aCGCCCA-G----------UUUCUGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 98739 0.67 0.978395
Target:  5'- cGCGGccgCGcGGGCGUuGGCCGCG-Cg -3'
miRNA:   3'- aCGCCca-GUuUCUGCAuUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 28762 0.67 0.973219
Target:  5'- cGCGGc-CGGGGGCGccUGGGCCGCGg- -3'
miRNA:   3'- aCGCCcaGUUUCUGC--AUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 50384 0.67 0.970318
Target:  5'- cGCGcGUCGAAGuACGUcgcGAAggccggcagccCCGCGUCg -3'
miRNA:   3'- aCGCcCAGUUUC-UGCA---UUU-----------GGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 87901 0.67 0.975909
Target:  5'- gGCGGGcC--GGGCGU--ACCGUGUg -3'
miRNA:   3'- aCGCCCaGuuUCUGCAuuUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 86354 0.67 0.9672
Target:  5'- uUGCGcccGG-CGAAGGCGc---CCGCGUCg -3'
miRNA:   3'- -ACGC---CCaGUUUCUGCauuuGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 32554 0.67 0.969406
Target:  5'- cGCGGGcCGgcGcGCGUGGAagugcucuccucguCCGCGUCc -3'
miRNA:   3'- aCGCCCaGUuuC-UGCAUUU--------------GGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 52809 0.67 0.970016
Target:  5'- cGCGGGUuggcaaaCAGGGGCGcuucgaGGGCCGCcUCg -3'
miRNA:   3'- aCGCCCA-------GUUUCUGCa-----UUUGGCGcAG- -5'
23589 3' -51.6 NC_005261.1 + 65805 0.67 0.970318
Target:  5'- cGCGGGUCGGGGuGCccGGGCgGCGg- -3'
miRNA:   3'- aCGCCCAGUUUC-UGcaUUUGgCGCag -5'
23589 3' -51.6 NC_005261.1 + 78851 0.67 0.970318
Target:  5'- gGCGGcgcccgccGcCGGAG-CGcGAGCCGCGUCa -3'
miRNA:   3'- aCGCC--------CaGUUUCuGCaUUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 126960 0.67 0.970318
Target:  5'- cGCGGGggCGGcaGCGcGAACCGCG-Cg -3'
miRNA:   3'- aCGCCCa-GUUucUGCaUUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 74351 0.67 0.973219
Target:  5'- cGCGGcGgcggaAGGGGCG---GCCGCGUCc -3'
miRNA:   3'- aCGCC-Cag---UUUCUGCauuUGGCGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.