miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 52809 0.67 0.970016
Target:  5'- cGCGGGUuggcaaaCAGGGGCGcuucgaGGGCCGCcUCg -3'
miRNA:   3'- aCGCCCA-------GUUUCUGCa-----UUUGGCGcAG- -5'
23589 3' -51.6 NC_005261.1 + 65805 0.67 0.970318
Target:  5'- cGCGGGUCGGGGuGCccGGGCgGCGg- -3'
miRNA:   3'- aCGCCCAGUUUC-UGcaUUUGgCGCag -5'
23589 3' -51.6 NC_005261.1 + 78851 0.67 0.970318
Target:  5'- gGCGGcgcccgccGcCGGAG-CGcGAGCCGCGUCa -3'
miRNA:   3'- aCGCC--------CaGUUUCuGCaUUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 126960 0.67 0.970318
Target:  5'- cGCGGGggCGGcaGCGcGAACCGCG-Cg -3'
miRNA:   3'- aCGCCCa-GUUucUGCaUUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 50384 0.67 0.970318
Target:  5'- cGCGcGUCGAAGuACGUcgcGAAggccggcagccCCGCGUCg -3'
miRNA:   3'- aCGCcCAGUUUC-UGCA---UUU-----------GGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 74351 0.67 0.973219
Target:  5'- cGCGGcGgcggaAGGGGCG---GCCGCGUCc -3'
miRNA:   3'- aCGCC-Cag---UUUCUGCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 70203 0.66 0.984902
Target:  5'- cGgGGGUUGAAGACGggcaugcuggaguugGcGCCGCG-Cg -3'
miRNA:   3'- aCgCCCAGUUUCUGCa--------------UuUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 1857 0.66 0.986477
Target:  5'- cGcCGGGccCGAAGACGc--GCCGCGa- -3'
miRNA:   3'- aC-GCCCa-GUUUCUGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 3414 0.66 0.986477
Target:  5'- gGCGGGcUGAAGagcGCGcGGGCCaGCGUCc -3'
miRNA:   3'- aCGCCCaGUUUC---UGCaUUUGG-CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 135100 0.66 0.986477
Target:  5'- gGCGGcGgagCGcGAGGCGgaccCCGCGUCu -3'
miRNA:   3'- aCGCC-Ca--GU-UUCUGCauuuGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 110297 0.66 0.986477
Target:  5'- gGCGGG-CGccugcgccgccGAGuACGgcAACCGCGcCg -3'
miRNA:   3'- aCGCCCaGU-----------UUC-UGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 121212 0.66 0.986477
Target:  5'- cGCGGGcCGGAGACugcagcACCGCa-- -3'
miRNA:   3'- aCGCCCaGUUUCUGcauu--UGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 102209 0.66 0.984719
Target:  5'- gUGCGGGUUGAacgcaAGcACGgccucgauGGCCGcCGUCg -3'
miRNA:   3'- -ACGCCCAGUU-----UC-UGCau------UUGGC-GCAG- -5'
23589 3' -51.6 NC_005261.1 + 92809 0.66 0.982792
Target:  5'- cGcCGGGcgCGcGGGCGUgGGACCGCG-Cg -3'
miRNA:   3'- aC-GCCCa-GUuUCUGCA-UUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 4451 0.66 0.982792
Target:  5'- aGCGGGcccucCAgcGGCGgcGGCC-CGUCg -3'
miRNA:   3'- aCGCCCa----GUuuCUGCauUUGGcGCAG- -5'
23589 3' -51.6 NC_005261.1 + 63432 0.66 0.980687
Target:  5'- cGCc-GUCGccGGCGUAGGCCGCGcCc -3'
miRNA:   3'- aCGccCAGUuuCUGCAUUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 132670 0.66 0.980687
Target:  5'- gUGUGGGUgCGAGGACaaGAugggcuuCCGCGUg -3'
miRNA:   3'- -ACGCCCA-GUUUCUGcaUUu------GGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 111431 0.66 0.986477
Target:  5'- gGCGGGcaAGAGACGgacGACCgGCGa- -3'
miRNA:   3'- aCGCCCagUUUCUGCau-UUGG-CGCag -5'
23589 3' -51.6 NC_005261.1 + 14038 0.66 0.980687
Target:  5'- aGCGGGgccaugCGAgcgguccgcAGGC--AGGCCGCGUCc -3'
miRNA:   3'- aCGCCCa-----GUU---------UCUGcaUUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 72838 0.66 0.980466
Target:  5'- gGCGgucGGcCAGggcgccagcgcccAGGCGUGGACCGCGg- -3'
miRNA:   3'- aCGC---CCaGUU-------------UCUGCAUUUGGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.