miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 105638 1.11 0.005058
Target:  5'- gUGCGGGUCAAAGACGUAAACCGCGUCg -3'
miRNA:   3'- -ACGCCCAGUUUCUGCAUUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 84306 0.83 0.295801
Target:  5'- gGCGGcGcCGAAGGCGUAggUCGCGUCc -3'
miRNA:   3'- aCGCC-CaGUUUCUGCAUuuGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 82958 0.79 0.43583
Target:  5'- cGcCGGGcgGAAGACGUGGugCGCGUCg -3'
miRNA:   3'- aC-GCCCagUUUCUGCAUUugGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 104185 0.78 0.483726
Target:  5'- cGCGGGUCGucGGGCG-GGACgGCGUCc -3'
miRNA:   3'- aCGCCCAGUu-UCUGCaUUUGgCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 43846 0.77 0.544296
Target:  5'- gGCGaGGgCGAGGACGc-GGCCGCGUCg -3'
miRNA:   3'- aCGC-CCaGUUUCUGCauUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 74920 0.77 0.554648
Target:  5'- cGCGGGggagggCGAGGACGggGACUGCGg- -3'
miRNA:   3'- aCGCCCa-----GUUUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 16188 0.75 0.649507
Target:  5'- gGCGGGggu-GGGCGggGGCCGCGUg -3'
miRNA:   3'- aCGCCCaguuUCUGCauUUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 109333 0.75 0.670645
Target:  5'- cGCGGccgCGGGGuCGgcGGCCGCGUCg -3'
miRNA:   3'- aCGCCca-GUUUCuGCauUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 17145 0.75 0.691648
Target:  5'- gGCGGGUC---GACGUAGACCGUc-- -3'
miRNA:   3'- aCGCCCAGuuuCUGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 115400 0.73 0.782356
Target:  5'- aGCGGGUCGucgaccgcGGGCGgcagccgGGGCCGCGg- -3'
miRNA:   3'- aCGCCCAGUu-------UCUGCa------UUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 136928 0.73 0.791846
Target:  5'- cGCGGcG-CAuguGGugGUAcaugGGCCGCGUCg -3'
miRNA:   3'- aCGCC-CaGUu--UCugCAU----UUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 119103 0.73 0.791846
Target:  5'- gGaCGGGagacccUUAAAGAUGUAGGCCGCGg- -3'
miRNA:   3'- aC-GCCC------AGUUUCUGCAUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 29648 0.72 0.810354
Target:  5'- cGCcGGUCGGGGACGccauGGCCGCG-Ca -3'
miRNA:   3'- aCGcCCAGUUUCUGCau--UUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 59797 0.72 0.819353
Target:  5'- gGCGGGcggCAGGccGGCGUGGcGCCGCGUg -3'
miRNA:   3'- aCGCCCa--GUUU--CUGCAUU-UGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 13100 0.72 0.819353
Target:  5'- gGCGGGcucggcUCGGGGGCGUcggcGGCCGCGg- -3'
miRNA:   3'- aCGCCC------AGUUUCUGCAu---UUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 35453 0.72 0.828169
Target:  5'- cGCGGGUCu-AGGCGcGGcgcGCgCGCGUCc -3'
miRNA:   3'- aCGCCCAGuuUCUGCaUU---UG-GCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 110803 0.72 0.836793
Target:  5'- gGCGGGcgaggaggCGGGGGCGgacgGGGCCGCGg- -3'
miRNA:   3'- aCGCCCa-------GUUUCUGCa---UUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 121110 0.72 0.836793
Target:  5'- gUGCGGGUCcucuAGGGCGcgGAGgCGCGg- -3'
miRNA:   3'- -ACGCCCAGu---UUCUGCa-UUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 68127 0.71 0.845218
Target:  5'- cGCGGGcCGcGGcGCGgcGACCGCGcCg -3'
miRNA:   3'- aCGCCCaGUuUC-UGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 72240 0.71 0.845218
Target:  5'- gGCGGuGcgcgCAAAgucGACGUGAACCGCGa- -3'
miRNA:   3'- aCGCC-Ca---GUUU---CUGCAUUUGGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.