miRNA display CGI


Results 41 - 60 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 73874 0.69 0.933707
Target:  5'- aGCGGGUCGuGGGCGUGucCCugaGCuUCg -3'
miRNA:   3'- aCGCCCAGUuUCUGCAUuuGG---CGcAG- -5'
23589 3' -51.6 NC_005261.1 + 27323 0.69 0.933707
Target:  5'- cGCGGGUCAAGGGgGcgGAACgGgGg- -3'
miRNA:   3'- aCGCCCAGUUUCUgCa-UUUGgCgCag -5'
23589 3' -51.6 NC_005261.1 + 34499 0.69 0.933707
Target:  5'- aGUGGGUCGAGGGCGcucUGGugggcaccuucGCCGUGa- -3'
miRNA:   3'- aCGCCCAGUUUCUGC---AUU-----------UGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 108878 0.69 0.933707
Target:  5'- aGCGGGU---GGACGacGGCCGCGc- -3'
miRNA:   3'- aCGCCCAguuUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 41686 0.69 0.938764
Target:  5'- cGCGGuGU-GAAGA-GUaGAGCCGCGUCc -3'
miRNA:   3'- aCGCC-CAgUUUCUgCA-UUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 91405 0.69 0.938764
Target:  5'- cGCGcccGG-CGAGGACGUGGAgCGCGa- -3'
miRNA:   3'- aCGC---CCaGUUUCUGCAUUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 127766 0.69 0.938764
Target:  5'- gGCGGGcgCGAAGACGcccGGCUGC-UCg -3'
miRNA:   3'- aCGCCCa-GUUUCUGCau-UUGGCGcAG- -5'
23589 3' -51.6 NC_005261.1 + 104808 0.69 0.938764
Target:  5'- aGCGGGUCccgcuccgcAgcGGCGUcgcgGGGCCGCGcCa -3'
miRNA:   3'- aCGCCCAG---------UuuCUGCA----UUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 108456 0.68 0.943566
Target:  5'- aGCGcGUCGucGGCGagGAucuCCGCGUCg -3'
miRNA:   3'- aCGCcCAGUuuCUGCa-UUu--GGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 97172 0.68 0.948115
Target:  5'- gGCuGGGUCGcGGGCGccggccGGGCCGCGg- -3'
miRNA:   3'- aCG-CCCAGUuUCUGCa-----UUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 95676 0.68 0.948115
Target:  5'- cGCGGGUguGAGcACGUGcacGAgCGCGa- -3'
miRNA:   3'- aCGCCCAguUUC-UGCAU---UUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 136809 0.68 0.952415
Target:  5'- gGCGGGcUCGuAGcCGUAGACgGCGcCc -3'
miRNA:   3'- aCGCCC-AGUuUCuGCAUUUGgCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 33890 0.68 0.954876
Target:  5'- gGCGcGUCAccGGGGCGcgcguauaaagcgGGGCCGCGUCu -3'
miRNA:   3'- aCGCcCAGU--UUCUGCa------------UUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 23946 0.68 0.956469
Target:  5'- gGCGGGuUCGGGGuCGUcgGCaCGCGg- -3'
miRNA:   3'- aCGCCC-AGUUUCuGCAuuUG-GCGCag -5'
23589 3' -51.6 NC_005261.1 + 66932 0.68 0.956469
Target:  5'- --gGGcGUCGAAGGCG---GCCGCGUa -3'
miRNA:   3'- acgCC-CAGUUUCUGCauuUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 47097 0.68 0.960281
Target:  5'- gGCGGGcCAGAGcccgucCGUGaggacGugCGCGUCc -3'
miRNA:   3'- aCGCCCaGUUUCu-----GCAU-----UugGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 60120 0.68 0.960281
Target:  5'- cGCGGG-C----ACGUAGGCCGCGa- -3'
miRNA:   3'- aCGCCCaGuuucUGCAUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 118218 0.68 0.960281
Target:  5'- cGCGGGgCGcuGACGgccgcGGCCGCGg- -3'
miRNA:   3'- aCGCCCaGUuuCUGCau---UUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 82603 0.68 0.960281
Target:  5'- cGCuGGUCcGGGcGCGUGAGCCGCc-- -3'
miRNA:   3'- aCGcCCAGuUUC-UGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 129659 0.68 0.963856
Target:  5'- gGCGGcGgCAGGGGCG-GGACCggggGCGUCg -3'
miRNA:   3'- aCGCC-CaGUUUCUGCaUUUGG----CGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.