Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 106093 | 0.66 | 0.982792 |
Target: 5'- aGCGGcGaUCGc-GACGUcgGCCGgCGUCg -3' miRNA: 3'- aCGCC-C-AGUuuCUGCAuuUGGC-GCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 63432 | 0.66 | 0.980687 |
Target: 5'- cGCc-GUCGccGGCGUAGGCCGCGcCc -3' miRNA: 3'- aCGccCAGUuuCUGCAUUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 132670 | 0.66 | 0.980687 |
Target: 5'- gUGUGGGUgCGAGGACaaGAugggcuuCCGCGUg -3' miRNA: 3'- -ACGCCCA-GUUUCUGcaUUu------GGCGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 14038 | 0.66 | 0.980687 |
Target: 5'- aGCGGGgccaugCGAgcgguccgcAGGC--AGGCCGCGUCc -3' miRNA: 3'- aCGCCCa-----GUU---------UCUGcaUUUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 72838 | 0.66 | 0.980466 |
Target: 5'- gGCGgucGGcCAGggcgccagcgcccAGGCGUGGACCGCGg- -3' miRNA: 3'- aCGC---CCaGUU-------------UCUGCAUUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 129565 | 0.67 | 0.978395 |
Target: 5'- gGCGGGcgUAGAGGaggaGgcGGCCGCG-Cg -3' miRNA: 3'- aCGCCCa-GUUUCUg---CauUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 98739 | 0.67 | 0.978395 |
Target: 5'- cGCGGccgCGcGGGCGUuGGCCGCG-Cg -3' miRNA: 3'- aCGCCca-GUuUCUGCAuUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 109673 | 0.67 | 0.978395 |
Target: 5'- cGCGGGUgCugagcggacgAGGGACGauGGCCGCGcCu -3' miRNA: 3'- aCGCCCA-G----------UUUCUGCauUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 63024 | 0.67 | 0.977914 |
Target: 5'- cGCGGG-CGccggcgcccgcggcGAGGCGgucgcgcagcagcGCCGCGUCg -3' miRNA: 3'- aCGCCCaGU--------------UUCUGCauu----------UGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 10947 | 0.67 | 0.975909 |
Target: 5'- cGCGGGgcccgccccCAGAcGCGUGGGCCGCc-- -3' miRNA: 3'- aCGCCCa--------GUUUcUGCAUUUGGCGcag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 87713 | 0.67 | 0.975909 |
Target: 5'- gUGCGagcuuaucgaGGUCcAGGugG---GCCGCGUCg -3' miRNA: 3'- -ACGC----------CCAGuUUCugCauuUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 97056 | 0.67 | 0.975909 |
Target: 5'- gGCGGGgggCGGcGGGCacgauCCGCGUCg -3' miRNA: 3'- aCGCCCa--GUU-UCUGcauuuGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 100963 | 0.67 | 0.975909 |
Target: 5'- cGCGcGGUCucgugGAAGGCGcccAgCGCGUCg -3' miRNA: 3'- aCGC-CCAG-----UUUCUGCauuUgGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 104857 | 0.67 | 0.975909 |
Target: 5'- cGCGGGUCAcgcacGCGUcGAUgucaGCGUCg -3' miRNA: 3'- aCGCCCAGUuuc--UGCAuUUGg---CGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 134398 | 0.67 | 0.975909 |
Target: 5'- aGCGGGaUCAggAAGguguGCGUGAACUGCu-- -3' miRNA: 3'- aCGCCC-AGU--UUC----UGCAUUUGGCGcag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 136583 | 0.67 | 0.975909 |
Target: 5'- gGCGGGcgCAGAGACGcccGGCgcaGCGUg -3' miRNA: 3'- aCGCCCa-GUUUCUGCau-UUGg--CGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 87901 | 0.67 | 0.975909 |
Target: 5'- gGCGGGcC--GGGCGU--ACCGUGUg -3' miRNA: 3'- aCGCCCaGuuUCUGCAuuUGGCGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 94765 | 0.67 | 0.975909 |
Target: 5'- -cUGGuUCGAGGACGUGGcGCCGCG-Cg -3' miRNA: 3'- acGCCcAGUUUCUGCAUU-UGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 28762 | 0.67 | 0.973219 |
Target: 5'- cGCGGc-CGGGGGCGccUGGGCCGCGg- -3' miRNA: 3'- aCGCCcaGUUUCUGC--AUUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 74351 | 0.67 | 0.973219 |
Target: 5'- cGCGGcGgcggaAGGGGCG---GCCGCGUCc -3' miRNA: 3'- aCGCC-Cag---UUUCUGCauuUGGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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