Results 41 - 60 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 65805 | 0.67 | 0.970318 |
Target: 5'- cGCGGGUCGGGGuGCccGGGCgGCGg- -3' miRNA: 3'- aCGCCCAGUUUC-UGcaUUUGgCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 78851 | 0.67 | 0.970318 |
Target: 5'- gGCGGcgcccgccGcCGGAG-CGcGAGCCGCGUCa -3' miRNA: 3'- aCGCC--------CaGUUUCuGCaUUUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 126960 | 0.67 | 0.970318 |
Target: 5'- cGCGGGggCGGcaGCGcGAACCGCG-Cg -3' miRNA: 3'- aCGCCCa-GUUucUGCaUUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 50384 | 0.67 | 0.970318 |
Target: 5'- cGCGcGUCGAAGuACGUcgcGAAggccggcagccCCGCGUCg -3' miRNA: 3'- aCGCcCAGUUUC-UGCA---UUU-----------GGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 52809 | 0.67 | 0.970016 |
Target: 5'- cGCGGGUuggcaaaCAGGGGCGcuucgaGGGCCGCcUCg -3' miRNA: 3'- aCGCCCA-------GUUUCUGCa-----UUUGGCGcAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 32554 | 0.67 | 0.969406 |
Target: 5'- cGCGGGcCGgcGcGCGUGGAagugcucuccucguCCGCGUCc -3' miRNA: 3'- aCGCCCaGUuuC-UGCAUUU--------------GGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 22748 | 0.67 | 0.9672 |
Target: 5'- cGCGGGgCGgcGGCGgcccaCGCGUCu -3' miRNA: 3'- aCGCCCaGUuuCUGCauuugGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 86354 | 0.67 | 0.9672 |
Target: 5'- uUGCGcccGG-CGAAGGCGc---CCGCGUCg -3' miRNA: 3'- -ACGC---CCaGUUUCUGCauuuGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 56146 | 0.68 | 0.963856 |
Target: 5'- cGCGGGcCGAGGgugGCGgcAGCgGCGg- -3' miRNA: 3'- aCGCCCaGUUUC---UGCauUUGgCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 13968 | 0.68 | 0.963856 |
Target: 5'- cGCGcGGUCAGGGACGacGAACUcccUGUCg -3' miRNA: 3'- aCGC-CCAGUUUCUGCa-UUUGGc--GCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 1745 | 0.68 | 0.963856 |
Target: 5'- cGCGGGccCAGGcGCGUGGccACCGUGUa -3' miRNA: 3'- aCGCCCa-GUUUcUGCAUU--UGGCGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 129659 | 0.68 | 0.963856 |
Target: 5'- gGCGGcGgCAGGGGCG-GGACCggggGCGUCg -3' miRNA: 3'- aCGCC-CaGUUUCUGCaUUUGG----CGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 47097 | 0.68 | 0.960281 |
Target: 5'- gGCGGGcCAGAGcccgucCGUGaggacGugCGCGUCc -3' miRNA: 3'- aCGCCCaGUUUCu-----GCAU-----UugGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 60120 | 0.68 | 0.960281 |
Target: 5'- cGCGGG-C----ACGUAGGCCGCGa- -3' miRNA: 3'- aCGCCCaGuuucUGCAUUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 82603 | 0.68 | 0.960281 |
Target: 5'- cGCuGGUCcGGGcGCGUGAGCCGCc-- -3' miRNA: 3'- aCGcCCAGuUUC-UGCAUUUGGCGcag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 118218 | 0.68 | 0.960281 |
Target: 5'- cGCGGGgCGcuGACGgccgcGGCCGCGg- -3' miRNA: 3'- aCGCCCaGUuuCUGCau---UUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 66932 | 0.68 | 0.956469 |
Target: 5'- --gGGcGUCGAAGGCG---GCCGCGUa -3' miRNA: 3'- acgCC-CAGUUUCUGCauuUGGCGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 23946 | 0.68 | 0.956469 |
Target: 5'- gGCGGGuUCGGGGuCGUcgGCaCGCGg- -3' miRNA: 3'- aCGCCC-AGUUUCuGCAuuUG-GCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 33890 | 0.68 | 0.954876 |
Target: 5'- gGCGcGUCAccGGGGCGcgcguauaaagcgGGGCCGCGUCu -3' miRNA: 3'- aCGCcCAGU--UUCUGCa------------UUUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 136809 | 0.68 | 0.952415 |
Target: 5'- gGCGGGcUCGuAGcCGUAGACgGCGcCc -3' miRNA: 3'- aCGCCC-AGUuUCuGCAUUUGgCGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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