miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 444 0.71 0.853435
Target:  5'- -cCGGGaCGGGGACGggGGCCGCGa- -3'
miRNA:   3'- acGCCCaGUUUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 1745 0.68 0.963856
Target:  5'- cGCGGGccCAGGcGCGUGGccACCGUGUa -3'
miRNA:   3'- aCGCCCa-GUUUcUGCAUU--UGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 1857 0.66 0.986477
Target:  5'- cGcCGGGccCGAAGACGc--GCCGCGa- -3'
miRNA:   3'- aC-GCCCa-GUUUCUGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 3414 0.66 0.986477
Target:  5'- gGCGGGcUGAAGagcGCGcGGGCCaGCGUCc -3'
miRNA:   3'- aCGCCCaGUUUC---UGCaUUUGG-CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 4451 0.66 0.982792
Target:  5'- aGCGGGcccucCAgcGGCGgcGGCC-CGUCg -3'
miRNA:   3'- aCGCCCa----GUuuCUGCauUUGGcGCAG- -5'
23589 3' -51.6 NC_005261.1 + 10947 0.67 0.975909
Target:  5'- cGCGGGgcccgccccCAGAcGCGUGGGCCGCc-- -3'
miRNA:   3'- aCGCCCa--------GUUUcUGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 12431 0.69 0.922825
Target:  5'- gGCGGaGggcuugcGGCGUcgGCCGCGUCg -3'
miRNA:   3'- aCGCC-Caguuu--CUGCAuuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 12749 0.7 0.891165
Target:  5'- gGCGGGcccggCGAGGuCGUAGGCgGCGg- -3'
miRNA:   3'- aCGCCCa----GUUUCuGCAUUUGgCGCag -5'
23589 3' -51.6 NC_005261.1 + 13100 0.72 0.819353
Target:  5'- gGCGGGcucggcUCGGGGGCGUcggcGGCCGCGg- -3'
miRNA:   3'- aCGCCC------AGUUUCUGCAu---UUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 13968 0.68 0.963856
Target:  5'- cGCGcGGUCAGGGACGacGAACUcccUGUCg -3'
miRNA:   3'- aCGC-CCAGUUUCUGCa-UUUGGc--GCAG- -5'
23589 3' -51.6 NC_005261.1 + 14038 0.66 0.980687
Target:  5'- aGCGGGgccaugCGAgcgguccgcAGGC--AGGCCGCGUCc -3'
miRNA:   3'- aCGCCCa-----GUU---------UCUGcaUUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 14188 0.66 0.986477
Target:  5'- cGCGGGUCAggcccagggaggAAGACGggcgcaccAACgCGCG-Cg -3'
miRNA:   3'- aCGCCCAGU------------UUCUGCau------UUG-GCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 15029 0.66 0.984159
Target:  5'- gGCGGGUgcCGGGGGCGUagcggggggggucgGggUCGCGg- -3'
miRNA:   3'- aCGCCCA--GUUUCUGCA--------------UuuGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 16188 0.75 0.649507
Target:  5'- gGCGGGggu-GGGCGggGGCCGCGUg -3'
miRNA:   3'- aCGCCCaguuUCUGCauUUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 17145 0.75 0.691648
Target:  5'- gGCGGGUC---GACGUAGACCGUc-- -3'
miRNA:   3'- aCGCCCAGuuuCUGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 22074 0.69 0.928394
Target:  5'- gGCGGGgcUCGAGGGgGc--GCCGCGUg -3'
miRNA:   3'- aCGCCC--AGUUUCUgCauuUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 22748 0.67 0.9672
Target:  5'- cGCGGGgCGgcGGCGgcccaCGCGUCu -3'
miRNA:   3'- aCGCCCaGUuuCUGCauuugGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 23946 0.68 0.956469
Target:  5'- gGCGGGuUCGGGGuCGUcgGCaCGCGg- -3'
miRNA:   3'- aCGCCC-AGUUUCuGCAuuUG-GCGCag -5'
23589 3' -51.6 NC_005261.1 + 27323 0.69 0.933707
Target:  5'- cGCGGGUCAAGGGgGcgGAACgGgGg- -3'
miRNA:   3'- aCGCCCAGUUUCUgCa-UUUGgCgCag -5'
23589 3' -51.6 NC_005261.1 + 28762 0.67 0.973219
Target:  5'- cGCGGc-CGGGGGCGccUGGGCCGCGg- -3'
miRNA:   3'- aCGCCcaGUUUCUGC--AUUUGGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.