miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 68127 0.71 0.845218
Target:  5'- cGCGGGcCGcGGcGCGgcGACCGCGcCg -3'
miRNA:   3'- aCGCCCaGUuUC-UGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 69770 0.66 0.988076
Target:  5'- gGCGGcGcCGGGGAC-UGAGCCGC-UCc -3'
miRNA:   3'- aCGCC-CaGUUUCUGcAUUUGGCGcAG- -5'
23589 3' -51.6 NC_005261.1 + 70203 0.66 0.984902
Target:  5'- cGgGGGUUGAAGACGggcaugcuggaguugGcGCCGCG-Cg -3'
miRNA:   3'- aCgCCCAGUUUCUGCa--------------UuUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 72240 0.71 0.845218
Target:  5'- gGCGGuGcgcgCAAAgucGACGUGAACCGCGa- -3'
miRNA:   3'- aCGCC-Ca---GUUU---CUGCAUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 72838 0.66 0.980466
Target:  5'- gGCGgucGGcCAGggcgccagcgcccAGGCGUGGACCGCGg- -3'
miRNA:   3'- aCGC---CCaGUU-------------UCUGCAUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 73591 0.71 0.861438
Target:  5'- cGCGG--CGGAGGCGgcGGCCGCGa- -3'
miRNA:   3'- aCGCCcaGUUUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 73874 0.69 0.933707
Target:  5'- aGCGGGUCGuGGGCGUGucCCugaGCuUCg -3'
miRNA:   3'- aCGCCCAGUuUCUGCAUuuGG---CGcAG- -5'
23589 3' -51.6 NC_005261.1 + 74351 0.67 0.973219
Target:  5'- cGCGGcGgcggaAGGGGCG---GCCGCGUCc -3'
miRNA:   3'- aCGCC-Cag---UUUCUGCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 74920 0.77 0.554648
Target:  5'- cGCGGGggagggCGAGGACGggGACUGCGg- -3'
miRNA:   3'- aCGCCCa-----GUUUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 75236 0.66 0.984719
Target:  5'- aGCGGGcgCAuguacGugGgcAACCGCG-Cg -3'
miRNA:   3'- aCGCCCa-GUuu---CugCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 75503 0.66 0.988076
Target:  5'- cGCGGGgcgCuGGAGGCGcacGCCGUGgUCg -3'
miRNA:   3'- aCGCCCa--G-UUUCUGCauuUGGCGC-AG- -5'
23589 3' -51.6 NC_005261.1 + 76187 0.69 0.917
Target:  5'- aGCGGGgccuGGGCGUGcugaugcagcAGCCGCGcCu -3'
miRNA:   3'- aCGCCCaguuUCUGCAU----------UUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 78851 0.67 0.970318
Target:  5'- gGCGGcgcccgccGcCGGAG-CGcGAGCCGCGUCa -3'
miRNA:   3'- aCGCC--------CaGUUUCuGCaUUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 82068 0.7 0.910919
Target:  5'- cGcCGGGUCGAcGGCGU--GCCGCa-- -3'
miRNA:   3'- aC-GCCCAGUUuCUGCAuuUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 82603 0.68 0.960281
Target:  5'- cGCuGGUCcGGGcGCGUGAGCCGCc-- -3'
miRNA:   3'- aCGcCCAGuUUC-UGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 82958 0.79 0.43583
Target:  5'- cGcCGGGcgGAAGACGUGGugCGCGUCg -3'
miRNA:   3'- aC-GCCCagUUUCUGCAUUugGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 84306 0.83 0.295801
Target:  5'- gGCGGcGcCGAAGGCGUAggUCGCGUCc -3'
miRNA:   3'- aCGCC-CaGUUUCUGCAUuuGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 84956 0.66 0.984719
Target:  5'- gGCGGccgCcGAGGCGUcgGgCGCGUCc -3'
miRNA:   3'- aCGCCca-GuUUCUGCAuuUgGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 86354 0.67 0.9672
Target:  5'- uUGCGcccGG-CGAAGGCGc---CCGCGUCg -3'
miRNA:   3'- -ACGC---CCaGUUUCUGCauuuGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 86593 0.66 0.986477
Target:  5'- gGCGGcgccGUCcuuGGCGUcgGCCGCGcCg -3'
miRNA:   3'- aCGCC----CAGuuuCUGCAuuUGGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.