miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 86950 0.66 0.988076
Target:  5'- gGCuGGUCAAAGAcCGUGAAgCacaCGUCc -3'
miRNA:   3'- aCGcCCAGUUUCU-GCAUUUgGc--GCAG- -5'
23589 3' -51.6 NC_005261.1 + 87713 0.67 0.975909
Target:  5'- gUGCGagcuuaucgaGGUCcAGGugG---GCCGCGUCg -3'
miRNA:   3'- -ACGC----------CCAGuUUCugCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 87901 0.67 0.975909
Target:  5'- gGCGGGcC--GGGCGU--ACCGUGUg -3'
miRNA:   3'- aCGCCCaGuuUCUGCAuuUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 91405 0.69 0.938764
Target:  5'- cGCGcccGG-CGAGGACGUGGAgCGCGa- -3'
miRNA:   3'- aCGC---CCaGUUUCUGCAUUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 92809 0.66 0.982792
Target:  5'- cGcCGGGcgCGcGGGCGUgGGACCGCG-Cg -3'
miRNA:   3'- aC-GCCCa-GUuUCUGCA-UUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 94765 0.67 0.975909
Target:  5'- -cUGGuUCGAGGACGUGGcGCCGCG-Cg -3'
miRNA:   3'- acGCCcAGUUUCUGCAUU-UGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 95676 0.68 0.948115
Target:  5'- cGCGGGUguGAGcACGUGcacGAgCGCGa- -3'
miRNA:   3'- aCGCCCAguUUC-UGCAU---UUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 97056 0.67 0.975909
Target:  5'- gGCGGGgggCGGcGGGCacgauCCGCGUCg -3'
miRNA:   3'- aCGCCCa--GUU-UCUGcauuuGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 97172 0.68 0.948115
Target:  5'- gGCuGGGUCGcGGGCGccggccGGGCCGCGg- -3'
miRNA:   3'- aCG-CCCAGUuUCUGCa-----UUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 98739 0.67 0.978395
Target:  5'- cGCGGccgCGcGGGCGUuGGCCGCG-Cg -3'
miRNA:   3'- aCGCCca-GUuUCUGCAuUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 98913 0.71 0.845218
Target:  5'- aGCGGGUCGgcGGgGUcgGCUGCGg- -3'
miRNA:   3'- aCGCCCAGUuuCUgCAuuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 99713 0.66 0.988076
Target:  5'- cGCcacGGUCGcgcGCGU-GGCCGCGUCa -3'
miRNA:   3'- aCGc--CCAGUuucUGCAuUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 100963 0.67 0.975909
Target:  5'- cGCGcGGUCucgugGAAGGCGcccAgCGCGUCg -3'
miRNA:   3'- aCGC-CCAG-----UUUCUGCauuUgGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 102209 0.66 0.984719
Target:  5'- gUGCGGGUUGAacgcaAGcACGgccucgauGGCCGcCGUCg -3'
miRNA:   3'- -ACGCCCAGUU-----UC-UGCau------UUGGC-GCAG- -5'
23589 3' -51.6 NC_005261.1 + 102300 0.7 0.904585
Target:  5'- cGCGGGUCGuAGcCGcgcGCCGCGg- -3'
miRNA:   3'- aCGCCCAGUuUCuGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 104185 0.78 0.483726
Target:  5'- cGCGGGUCGucGGGCG-GGACgGCGUCc -3'
miRNA:   3'- aCGCCCAGUu-UCUGCaUUUGgCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 104808 0.69 0.938764
Target:  5'- aGCGGGUCccgcuccgcAgcGGCGUcgcgGGGCCGCGcCa -3'
miRNA:   3'- aCGCCCAG---------UuuCUGCA----UUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 104857 0.67 0.975909
Target:  5'- cGCGGGUCAcgcacGCGUcGAUgucaGCGUCg -3'
miRNA:   3'- aCGCCCAGUuuc--UGCAuUUGg---CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 105638 1.11 0.005058
Target:  5'- gUGCGGGUCAAAGACGUAAACCGCGUCg -3'
miRNA:   3'- -ACGCCCAGUUUCUGCAUUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 106093 0.66 0.982792
Target:  5'- aGCGGcGaUCGc-GACGUcgGCCGgCGUCg -3'
miRNA:   3'- aCGCC-C-AGUuuCUGCAuuUGGC-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.