miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 108456 0.68 0.943566
Target:  5'- aGCGcGUCGucGGCGagGAucuCCGCGUCg -3'
miRNA:   3'- aCGCcCAGUuuCUGCa-UUu--GGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 108733 0.71 0.861438
Target:  5'- cGCGGGcCAgcGGCGgc-GCCGCGg- -3'
miRNA:   3'- aCGCCCaGUuuCUGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 108878 0.69 0.933707
Target:  5'- aGCGGGU---GGACGacGGCCGCGc- -3'
miRNA:   3'- aCGCCCAguuUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 108919 0.69 0.928394
Target:  5'- cGCgGGGUCGGGGcccagcacgcccACGcacGCCGCGUCc -3'
miRNA:   3'- aCG-CCCAGUUUC------------UGCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 109333 0.75 0.670645
Target:  5'- cGCGGccgCGGGGuCGgcGGCCGCGUCg -3'
miRNA:   3'- aCGCCca-GUUUCuGCauUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 109673 0.67 0.978395
Target:  5'- cGCGGGUgCugagcggacgAGGGACGauGGCCGCGcCu -3'
miRNA:   3'- aCGCCCA-G----------UUUCUGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 110297 0.66 0.986477
Target:  5'- gGCGGG-CGccugcgccgccGAGuACGgcAACCGCGcCg -3'
miRNA:   3'- aCGCCCaGU-----------UUC-UGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 110803 0.72 0.836793
Target:  5'- gGCGGGcgaggaggCGGGGGCGgacgGGGCCGCGg- -3'
miRNA:   3'- aCGCCCa-------GUUUCUGCa---UUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 111431 0.66 0.986477
Target:  5'- gGCGGGcaAGAGACGgacGACCgGCGa- -3'
miRNA:   3'- aCGCCCagUUUCUGCau-UUGG-CGCag -5'
23589 3' -51.6 NC_005261.1 + 111724 0.69 0.933187
Target:  5'- cGCGGGUCGacGAGcgcguguACGUGAAgUGCGg- -3'
miRNA:   3'- aCGCCCAGU--UUC-------UGCAUUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 115400 0.73 0.782356
Target:  5'- aGCGGGUCGucgaccgcGGGCGgcagccgGGGCCGCGg- -3'
miRNA:   3'- aCGCCCAGUu-------UCUGCa------UUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 115642 0.69 0.922825
Target:  5'- cGuCGGGggGAAGAgGggcGCCGCGUCu -3'
miRNA:   3'- aC-GCCCagUUUCUgCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 118218 0.68 0.960281
Target:  5'- cGCGGGgCGcuGACGgccgcGGCCGCGg- -3'
miRNA:   3'- aCGCCCaGUuuCUGCau---UUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 119103 0.73 0.791846
Target:  5'- gGaCGGGagacccUUAAAGAUGUAGGCCGCGg- -3'
miRNA:   3'- aC-GCCC------AGUUUCUGCAUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 121110 0.72 0.836793
Target:  5'- gUGCGGGUCcucuAGGGCGcgGAGgCGCGg- -3'
miRNA:   3'- -ACGCCCAGu---UUCUGCa-UUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 121212 0.66 0.986477
Target:  5'- cGCGGGcCGGAGACugcagcACCGCa-- -3'
miRNA:   3'- aCGCCCaGUUUCUGcauu--UGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 124190 0.7 0.910919
Target:  5'- cGUGGGgggacgCGuccgguGGCGUGAACUGCGUg -3'
miRNA:   3'- aCGCCCa-----GUuu----CUGCAUUUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 126960 0.67 0.970318
Target:  5'- cGCGGGggCGGcaGCGcGAACCGCG-Cg -3'
miRNA:   3'- aCGCCCa-GUUucUGCaUUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 127663 0.7 0.897999
Target:  5'- cGCGGGUUcgGGGCG-GGACgGCGg- -3'
miRNA:   3'- aCGCCCAGuuUCUGCaUUUGgCGCag -5'
23589 3' -51.6 NC_005261.1 + 127766 0.69 0.938764
Target:  5'- gGCGGGcgCGAAGACGcccGGCUGC-UCg -3'
miRNA:   3'- aCGCCCa-GUUUCUGCau-UUGGCGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.