miRNA display CGI


Results 21 - 40 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 115400 0.73 0.782356
Target:  5'- aGCGGGUCGucgaccgcGGGCGgcagccgGGGCCGCGg- -3'
miRNA:   3'- aCGCCCAGUu-------UCUGCa------UUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 111724 0.69 0.933187
Target:  5'- cGCGGGUCGacGAGcgcguguACGUGAAgUGCGg- -3'
miRNA:   3'- aCGCCCAGU--UUC-------UGCAUUUgGCGCag -5'
23589 3' -51.6 NC_005261.1 + 111431 0.66 0.986477
Target:  5'- gGCGGGcaAGAGACGgacGACCgGCGa- -3'
miRNA:   3'- aCGCCCagUUUCUGCau-UUGG-CGCag -5'
23589 3' -51.6 NC_005261.1 + 110803 0.72 0.836793
Target:  5'- gGCGGGcgaggaggCGGGGGCGgacgGGGCCGCGg- -3'
miRNA:   3'- aCGCCCa-------GUUUCUGCa---UUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 110297 0.66 0.986477
Target:  5'- gGCGGG-CGccugcgccgccGAGuACGgcAACCGCGcCg -3'
miRNA:   3'- aCGCCCaGU-----------UUC-UGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 109673 0.67 0.978395
Target:  5'- cGCGGGUgCugagcggacgAGGGACGauGGCCGCGcCu -3'
miRNA:   3'- aCGCCCA-G----------UUUCUGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 109333 0.75 0.670645
Target:  5'- cGCGGccgCGGGGuCGgcGGCCGCGUCg -3'
miRNA:   3'- aCGCCca-GUUUCuGCauUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 108919 0.69 0.928394
Target:  5'- cGCgGGGUCGGGGcccagcacgcccACGcacGCCGCGUCc -3'
miRNA:   3'- aCG-CCCAGUUUC------------UGCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 108878 0.69 0.933707
Target:  5'- aGCGGGU---GGACGacGGCCGCGc- -3'
miRNA:   3'- aCGCCCAguuUCUGCauUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 108733 0.71 0.861438
Target:  5'- cGCGGGcCAgcGGCGgc-GCCGCGg- -3'
miRNA:   3'- aCGCCCaGUuuCUGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 108456 0.68 0.943566
Target:  5'- aGCGcGUCGucGGCGagGAucuCCGCGUCg -3'
miRNA:   3'- aCGCcCAGUuuCUGCa-UUu--GGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 106093 0.66 0.982792
Target:  5'- aGCGGcGaUCGc-GACGUcgGCCGgCGUCg -3'
miRNA:   3'- aCGCC-C-AGUuuCUGCAuuUGGC-GCAG- -5'
23589 3' -51.6 NC_005261.1 + 105638 1.11 0.005058
Target:  5'- gUGCGGGUCAAAGACGUAAACCGCGUCg -3'
miRNA:   3'- -ACGCCCAGUUUCUGCAUUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 104857 0.67 0.975909
Target:  5'- cGCGGGUCAcgcacGCGUcGAUgucaGCGUCg -3'
miRNA:   3'- aCGCCCAGUuuc--UGCAuUUGg---CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 104808 0.69 0.938764
Target:  5'- aGCGGGUCccgcuccgcAgcGGCGUcgcgGGGCCGCGcCa -3'
miRNA:   3'- aCGCCCAG---------UuuCUGCA----UUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 104185 0.78 0.483726
Target:  5'- cGCGGGUCGucGGGCG-GGACgGCGUCc -3'
miRNA:   3'- aCGCCCAGUu-UCUGCaUUUGgCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 102300 0.7 0.904585
Target:  5'- cGCGGGUCGuAGcCGcgcGCCGCGg- -3'
miRNA:   3'- aCGCCCAGUuUCuGCauuUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 102209 0.66 0.984719
Target:  5'- gUGCGGGUUGAacgcaAGcACGgccucgauGGCCGcCGUCg -3'
miRNA:   3'- -ACGCCCAGUU-----UC-UGCau------UUGGC-GCAG- -5'
23589 3' -51.6 NC_005261.1 + 100963 0.67 0.975909
Target:  5'- cGCGcGGUCucgugGAAGGCGcccAgCGCGUCg -3'
miRNA:   3'- aCGC-CCAG-----UUUCUGCauuUgGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 99713 0.66 0.988076
Target:  5'- cGCcacGGUCGcgcGCGU-GGCCGCGUCa -3'
miRNA:   3'- aCGc--CCAGUuucUGCAuUUGGCGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.