Results 41 - 60 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 98913 | 0.71 | 0.845218 |
Target: 5'- aGCGGGUCGgcGGgGUcgGCUGCGg- -3' miRNA: 3'- aCGCCCAGUuuCUgCAuuUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 98739 | 0.67 | 0.978395 |
Target: 5'- cGCGGccgCGcGGGCGUuGGCCGCG-Cg -3' miRNA: 3'- aCGCCca-GUuUCUGCAuUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 97172 | 0.68 | 0.948115 |
Target: 5'- gGCuGGGUCGcGGGCGccggccGGGCCGCGg- -3' miRNA: 3'- aCG-CCCAGUuUCUGCa-----UUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 97056 | 0.67 | 0.975909 |
Target: 5'- gGCGGGgggCGGcGGGCacgauCCGCGUCg -3' miRNA: 3'- aCGCCCa--GUU-UCUGcauuuGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 95676 | 0.68 | 0.948115 |
Target: 5'- cGCGGGUguGAGcACGUGcacGAgCGCGa- -3' miRNA: 3'- aCGCCCAguUUC-UGCAU---UUgGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 94765 | 0.67 | 0.975909 |
Target: 5'- -cUGGuUCGAGGACGUGGcGCCGCG-Cg -3' miRNA: 3'- acGCCcAGUUUCUGCAUU-UGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 92809 | 0.66 | 0.982792 |
Target: 5'- cGcCGGGcgCGcGGGCGUgGGACCGCG-Cg -3' miRNA: 3'- aC-GCCCa-GUuUCUGCA-UUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 91405 | 0.69 | 0.938764 |
Target: 5'- cGCGcccGG-CGAGGACGUGGAgCGCGa- -3' miRNA: 3'- aCGC---CCaGUUUCUGCAUUUgGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 87901 | 0.67 | 0.975909 |
Target: 5'- gGCGGGcC--GGGCGU--ACCGUGUg -3' miRNA: 3'- aCGCCCaGuuUCUGCAuuUGGCGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 87713 | 0.67 | 0.975909 |
Target: 5'- gUGCGagcuuaucgaGGUCcAGGugG---GCCGCGUCg -3' miRNA: 3'- -ACGC----------CCAGuUUCugCauuUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 86950 | 0.66 | 0.988076 |
Target: 5'- gGCuGGUCAAAGAcCGUGAAgCacaCGUCc -3' miRNA: 3'- aCGcCCAGUUUCU-GCAUUUgGc--GCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 86593 | 0.66 | 0.986477 |
Target: 5'- gGCGGcgccGUCcuuGGCGUcgGCCGCGcCg -3' miRNA: 3'- aCGCC----CAGuuuCUGCAuuUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 86354 | 0.67 | 0.9672 |
Target: 5'- uUGCGcccGG-CGAAGGCGc---CCGCGUCg -3' miRNA: 3'- -ACGC---CCaGUUUCUGCauuuGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 84956 | 0.66 | 0.984719 |
Target: 5'- gGCGGccgCcGAGGCGUcgGgCGCGUCc -3' miRNA: 3'- aCGCCca-GuUUCUGCAuuUgGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 84306 | 0.83 | 0.295801 |
Target: 5'- gGCGGcGcCGAAGGCGUAggUCGCGUCc -3' miRNA: 3'- aCGCC-CaGUUUCUGCAUuuGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 82958 | 0.79 | 0.43583 |
Target: 5'- cGcCGGGcgGAAGACGUGGugCGCGUCg -3' miRNA: 3'- aC-GCCCagUUUCUGCAUUugGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 82603 | 0.68 | 0.960281 |
Target: 5'- cGCuGGUCcGGGcGCGUGAGCCGCc-- -3' miRNA: 3'- aCGcCCAGuUUC-UGCAUUUGGCGcag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 82068 | 0.7 | 0.910919 |
Target: 5'- cGcCGGGUCGAcGGCGU--GCCGCa-- -3' miRNA: 3'- aC-GCCCAGUUuCUGCAuuUGGCGcag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 78851 | 0.67 | 0.970318 |
Target: 5'- gGCGGcgcccgccGcCGGAG-CGcGAGCCGCGUCa -3' miRNA: 3'- aCGCC--------CaGUUUCuGCaUUUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 76187 | 0.69 | 0.917 |
Target: 5'- aGCGGGgccuGGGCGUGcugaugcagcAGCCGCGcCu -3' miRNA: 3'- aCGCCCaguuUCUGCAU----------UUGGCGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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