Results 61 - 80 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23589 | 3' | -51.6 | NC_005261.1 | + | 75503 | 0.66 | 0.988076 |
Target: 5'- cGCGGGgcgCuGGAGGCGcacGCCGUGgUCg -3' miRNA: 3'- aCGCCCa--G-UUUCUGCauuUGGCGC-AG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 75236 | 0.66 | 0.984719 |
Target: 5'- aGCGGGcgCAuguacGugGgcAACCGCG-Cg -3' miRNA: 3'- aCGCCCa-GUuu---CugCauUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 74920 | 0.77 | 0.554648 |
Target: 5'- cGCGGGggagggCGAGGACGggGACUGCGg- -3' miRNA: 3'- aCGCCCa-----GUUUCUGCauUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 74351 | 0.67 | 0.973219 |
Target: 5'- cGCGGcGgcggaAGGGGCG---GCCGCGUCc -3' miRNA: 3'- aCGCC-Cag---UUUCUGCauuUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 73874 | 0.69 | 0.933707 |
Target: 5'- aGCGGGUCGuGGGCGUGucCCugaGCuUCg -3' miRNA: 3'- aCGCCCAGUuUCUGCAUuuGG---CGcAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 73591 | 0.71 | 0.861438 |
Target: 5'- cGCGG--CGGAGGCGgcGGCCGCGa- -3' miRNA: 3'- aCGCCcaGUUUCUGCauUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 72838 | 0.66 | 0.980466 |
Target: 5'- gGCGgucGGcCAGggcgccagcgcccAGGCGUGGACCGCGg- -3' miRNA: 3'- aCGC---CCaGUU-------------UCUGCAUUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 72240 | 0.71 | 0.845218 |
Target: 5'- gGCGGuGcgcgCAAAgucGACGUGAACCGCGa- -3' miRNA: 3'- aCGCC-Ca---GUUU---CUGCAUUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 70203 | 0.66 | 0.984902 |
Target: 5'- cGgGGGUUGAAGACGggcaugcuggaguugGcGCCGCG-Cg -3' miRNA: 3'- aCgCCCAGUUUCUGCa--------------UuUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 69770 | 0.66 | 0.988076 |
Target: 5'- gGCGGcGcCGGGGAC-UGAGCCGC-UCc -3' miRNA: 3'- aCGCC-CaGUUUCUGcAUUUGGCGcAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 68127 | 0.71 | 0.845218 |
Target: 5'- cGCGGGcCGcGGcGCGgcGACCGCGcCg -3' miRNA: 3'- aCGCCCaGUuUC-UGCauUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 67597 | 0.7 | 0.910919 |
Target: 5'- gGCGGGauucagccCGAAGGCGgacGCCGCGcCa -3' miRNA: 3'- aCGCCCa-------GUUUCUGCauuUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 66932 | 0.68 | 0.956469 |
Target: 5'- --gGGcGUCGAAGGCG---GCCGCGUa -3' miRNA: 3'- acgCC-CAGUUUCUGCauuUGGCGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 65805 | 0.67 | 0.970318 |
Target: 5'- cGCGGGUCGGGGuGCccGGGCgGCGg- -3' miRNA: 3'- aCGCCCAGUUUC-UGcaUUUGgCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 63432 | 0.66 | 0.980687 |
Target: 5'- cGCc-GUCGccGGCGUAGGCCGCGcCc -3' miRNA: 3'- aCGccCAGUuuCUGCAUUUGGCGCaG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 63024 | 0.67 | 0.977914 |
Target: 5'- cGCGGG-CGccggcgcccgcggcGAGGCGgucgcgcagcagcGCCGCGUCg -3' miRNA: 3'- aCGCCCaGU--------------UUCUGCauu----------UGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 60120 | 0.68 | 0.960281 |
Target: 5'- cGCGGG-C----ACGUAGGCCGCGa- -3' miRNA: 3'- aCGCCCaGuuucUGCAUUUGGCGCag -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 59797 | 0.72 | 0.819353 |
Target: 5'- gGCGGGcggCAGGccGGCGUGGcGCCGCGUg -3' miRNA: 3'- aCGCCCa--GUUU--CUGCAUU-UGGCGCAg -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 57888 | 0.69 | 0.928394 |
Target: 5'- gGcCGGcaCGGGGACGgccACCGCGUCg -3' miRNA: 3'- aC-GCCcaGUUUCUGCauuUGGCGCAG- -5' |
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23589 | 3' | -51.6 | NC_005261.1 | + | 56146 | 0.68 | 0.963856 |
Target: 5'- cGCGGGcCGAGGgugGCGgcAGCgGCGg- -3' miRNA: 3'- aCGCCCaGUUUC---UGCauUUGgCGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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