miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 3' -51.6 NC_005261.1 + 92809 0.66 0.982792
Target:  5'- cGcCGGGcgCGcGGGCGUgGGACCGCG-Cg -3'
miRNA:   3'- aC-GCCCa-GUuUCUGCA-UUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 4451 0.66 0.982792
Target:  5'- aGCGGGcccucCAgcGGCGgcGGCC-CGUCg -3'
miRNA:   3'- aCGCCCa----GUuuCUGCauUUGGcGCAG- -5'
23589 3' -51.6 NC_005261.1 + 136583 0.67 0.975909
Target:  5'- gGCGGGcgCAGAGACGcccGGCgcaGCGUg -3'
miRNA:   3'- aCGCCCa-GUUUCUGCau-UUGg--CGCAg -5'
23589 3' -51.6 NC_005261.1 + 134398 0.67 0.975909
Target:  5'- aGCGGGaUCAggAAGguguGCGUGAACUGCu-- -3'
miRNA:   3'- aCGCCC-AGU--UUC----UGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 104857 0.67 0.975909
Target:  5'- cGCGGGUCAcgcacGCGUcGAUgucaGCGUCg -3'
miRNA:   3'- aCGCCCAGUuuc--UGCAuUUGg---CGCAG- -5'
23589 3' -51.6 NC_005261.1 + 100963 0.67 0.975909
Target:  5'- cGCGcGGUCucgugGAAGGCGcccAgCGCGUCg -3'
miRNA:   3'- aCGC-CCAG-----UUUCUGCauuUgGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 97056 0.67 0.975909
Target:  5'- gGCGGGgggCGGcGGGCacgauCCGCGUCg -3'
miRNA:   3'- aCGCCCa--GUU-UCUGcauuuGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 87713 0.67 0.975909
Target:  5'- gUGCGagcuuaucgaGGUCcAGGugG---GCCGCGUCg -3'
miRNA:   3'- -ACGC----------CCAGuUUCugCauuUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 10947 0.67 0.975909
Target:  5'- cGCGGGgcccgccccCAGAcGCGUGGGCCGCc-- -3'
miRNA:   3'- aCGCCCa--------GUUUcUGCAUUUGGCGcag -5'
23589 3' -51.6 NC_005261.1 + 28762 0.67 0.973219
Target:  5'- cGCGGc-CGGGGGCGccUGGGCCGCGg- -3'
miRNA:   3'- aCGCCcaGUUUCUGC--AUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 87901 0.67 0.975909
Target:  5'- gGCGGGcC--GGGCGU--ACCGUGUg -3'
miRNA:   3'- aCGCCCaGuuUCUGCAuuUGGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 94765 0.67 0.975909
Target:  5'- -cUGGuUCGAGGACGUGGcGCCGCG-Cg -3'
miRNA:   3'- acGCCcAGUUUCUGCAUU-UGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 63432 0.66 0.980687
Target:  5'- cGCc-GUCGccGGCGUAGGCCGCGcCc -3'
miRNA:   3'- aCGccCAGUuuCUGCAUUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 132670 0.66 0.980687
Target:  5'- gUGUGGGUgCGAGGACaaGAugggcuuCCGCGUg -3'
miRNA:   3'- -ACGCCCA-GUUUCUGcaUUu------GGCGCAg -5'
23589 3' -51.6 NC_005261.1 + 14038 0.66 0.980687
Target:  5'- aGCGGGgccaugCGAgcgguccgcAGGC--AGGCCGCGUCc -3'
miRNA:   3'- aCGCCCa-----GUU---------UCUGcaUUUGGCGCAG- -5'
23589 3' -51.6 NC_005261.1 + 72838 0.66 0.980466
Target:  5'- gGCGgucGGcCAGggcgccagcgcccAGGCGUGGACCGCGg- -3'
miRNA:   3'- aCGC---CCaGUU-------------UCUGCAUUUGGCGCag -5'
23589 3' -51.6 NC_005261.1 + 109673 0.67 0.978395
Target:  5'- cGCGGGUgCugagcggacgAGGGACGauGGCCGCGcCu -3'
miRNA:   3'- aCGCCCA-G----------UUUCUGCauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 98739 0.67 0.978395
Target:  5'- cGCGGccgCGcGGGCGUuGGCCGCG-Cg -3'
miRNA:   3'- aCGCCca-GUuUCUGCAuUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 129565 0.67 0.978395
Target:  5'- gGCGGGcgUAGAGGaggaGgcGGCCGCG-Cg -3'
miRNA:   3'- aCGCCCa-GUUUCUg---CauUUGGCGCaG- -5'
23589 3' -51.6 NC_005261.1 + 63024 0.67 0.977914
Target:  5'- cGCGGG-CGccggcgcccgcggcGAGGCGgucgcgcagcagcGCCGCGUCg -3'
miRNA:   3'- aCGCCCaGU--------------UUCUGCauu----------UGGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.