miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 5' -62.8 NC_005261.1 + 105674 1.07 0.000695
Target:  5'- gAAGACGCCCACGCCCAUGGCGCCCACg -3'
miRNA:   3'- -UUCUGCGGGUGCGGGUACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 79033 0.82 0.051239
Target:  5'- cGGGGCGCCCGCGCCCuUGGCGUCguCc -3'
miRNA:   3'- -UUCUGCGGGUGCGGGuACCGCGGguG- -5'
23589 5' -62.8 NC_005261.1 + 126523 0.79 0.076061
Target:  5'- uGGGCGCCCGCGCCCGccGCGCCUcgGCc -3'
miRNA:   3'- uUCUGCGGGUGCGGGUacCGCGGG--UG- -5'
23589 5' -62.8 NC_005261.1 + 3909 0.79 0.078075
Target:  5'- cGGGCGCCCGCGCCgccGGCGCCgGCc -3'
miRNA:   3'- uUCUGCGGGUGCGGguaCCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 86673 0.78 0.088933
Target:  5'- -uGGCGCCCACcaGCCCGgcgaGGCGgCCCACg -3'
miRNA:   3'- uuCUGCGGGUG--CGGGUa---CCGC-GGGUG- -5'
23589 5' -62.8 NC_005261.1 + 63009 0.78 0.093667
Target:  5'- -cGGCGgCCGCGCCCGcgcgGGCGCCgGCg -3'
miRNA:   3'- uuCUGCgGGUGCGGGUa---CCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 29186 0.78 0.096122
Target:  5'- -cGGCGCCCuCGCCgc-GGCGCCCGCg -3'
miRNA:   3'- uuCUGCGGGuGCGGguaCCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 134863 0.78 0.098638
Target:  5'- cAAGGCGCCCGCGCCCccgcgGGCcCCUGCu -3'
miRNA:   3'- -UUCUGCGGGUGCGGGua---CCGcGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 31162 0.77 0.103858
Target:  5'- --cACGCCCGCGCCCAgcgccgcggcgcUGGCGgCCUACu -3'
miRNA:   3'- uucUGCGGGUGCGGGU------------ACCGC-GGGUG- -5'
23589 5' -62.8 NC_005261.1 + 12109 0.77 0.109337
Target:  5'- -cGGCGCCagcucuaGCGCCaggAUGGCGCCCGCc -3'
miRNA:   3'- uuCUGCGGg------UGCGGg--UACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 109500 0.77 0.11189
Target:  5'- -cGGgGCCCGCGCCCGccgcgggguuuauUGcGCGCCCGCc -3'
miRNA:   3'- uuCUgCGGGUGCGGGU-------------AC-CGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 117342 0.77 0.112177
Target:  5'- ---uUGCCCGCGCCCAaGGCgccGCCCGCa -3'
miRNA:   3'- uucuGCGGGUGCGGGUaCCG---CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 129813 0.76 0.124241
Target:  5'- --cGCGCCCGCGCCCu--GCGCCCGg -3'
miRNA:   3'- uucUGCGGGUGCGGGuacCGCGGGUg -5'
23589 5' -62.8 NC_005261.1 + 49920 0.76 0.12744
Target:  5'- -uGugGCCCGC-CUCGaGGCGCCCGCg -3'
miRNA:   3'- uuCugCGGGUGcGGGUaCCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 123007 0.76 0.12744
Target:  5'- --uACGgCCGCGgCCGUGGCGUCCGCg -3'
miRNA:   3'- uucUGCgGGUGCgGGUACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 38712 0.76 0.130715
Target:  5'- -cGGCcagGCCCGCGCCCccaGCGCCCGCa -3'
miRNA:   3'- uuCUG---CGGGUGCGGGuacCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 79281 0.76 0.130715
Target:  5'- -cGGCGCCCAgGCCCuggaagaaguUGGCgaGCCCGCg -3'
miRNA:   3'- uuCUGCGGGUgCGGGu---------ACCG--CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 45420 0.75 0.141011
Target:  5'- -cGGCGCCUGCGCCCGc--CGCCCGCg -3'
miRNA:   3'- uuCUGCGGGUGCGGGUaccGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 122314 0.75 0.141011
Target:  5'- -cGACGCCCGgGCCgGcggucaggUGGCGCUCGCa -3'
miRNA:   3'- uuCUGCGGGUgCGGgU--------ACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 72848 0.75 0.144605
Target:  5'- cAGGGCGCCaGCGCCCA-GGCGUggaCCGCg -3'
miRNA:   3'- -UUCUGCGGgUGCGGGUaCCGCG---GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.