miRNA display CGI


Results 1 - 20 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 5' -62.8 NC_005261.1 + 113 0.71 0.271587
Target:  5'- -cGcCGCCCGCGCCgGcgccgccccUGGUGCUCGCg -3'
miRNA:   3'- uuCuGCGGGUGCGGgU---------ACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 209 0.67 0.465088
Target:  5'- -uGcCGCCgC-CGCCCcUGGUGCUCGCg -3'
miRNA:   3'- uuCuGCGG-GuGCGGGuACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 1282 0.66 0.521265
Target:  5'- -cGGCGCCCAgGCCgGcggGGCuCCCGu -3'
miRNA:   3'- uuCUGCGGGUgCGGgUa--CCGcGGGUg -5'
23589 5' -62.8 NC_005261.1 + 1330 0.66 0.540587
Target:  5'- cGGGACGCcgCCGCGCC----GCGCCUGCa -3'
miRNA:   3'- -UUCUGCG--GGUGCGGguacCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 1428 0.67 0.456028
Target:  5'- -cGGCGCCCGCcuccaGCaCCAgcggcGGCGCCUcgGCg -3'
miRNA:   3'- uuCUGCGGGUG-----CG-GGUa----CCGCGGG--UG- -5'
23589 5' -62.8 NC_005261.1 + 1867 0.69 0.387224
Target:  5'- gAAGACGCgCCGCGaggCCAgcacGGCGCgCGCc -3'
miRNA:   3'- -UUCUGCG-GGUGCg--GGUa---CCGCGgGUG- -5'
23589 5' -62.8 NC_005261.1 + 2132 0.71 0.290957
Target:  5'- cGAGcGCGCUCACGUCCGgcGCGCCCGu -3'
miRNA:   3'- -UUC-UGCGGGUGCGGGUacCGCGGGUg -5'
23589 5' -62.8 NC_005261.1 + 2399 0.68 0.4382
Target:  5'- -cGGCGagCGCGCCCGcgGGC-CCCGCg -3'
miRNA:   3'- uuCUGCggGUGCGGGUa-CCGcGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 3721 0.68 0.40378
Target:  5'- cAGACGCgCCgcugccggacGCGCCgGcGGCGCaCCGCg -3'
miRNA:   3'- uUCUGCG-GG----------UGCGGgUaCCGCG-GGUG- -5'
23589 5' -62.8 NC_005261.1 + 3838 0.66 0.560143
Target:  5'- cGGGCGCUgGCGgCagcGGCGCCgGCg -3'
miRNA:   3'- uUCUGCGGgUGCgGguaCCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 3909 0.79 0.078075
Target:  5'- cGGGCGCCCGCGCCgccGGCGCCgGCc -3'
miRNA:   3'- uUCUGCGGGUGCGGguaCCGCGGgUG- -5'
23589 5' -62.8 NC_005261.1 + 4043 0.68 0.426828
Target:  5'- --aGCGCCCacagcgcguucugcGCGgCCAUGGCGUCCcCg -3'
miRNA:   3'- uucUGCGGG--------------UGCgGGUACCGCGGGuG- -5'
23589 5' -62.8 NC_005261.1 + 4355 0.66 0.530894
Target:  5'- cAGAgGCCCuCGCgaGUGuCGCCCGCg -3'
miRNA:   3'- uUCUgCGGGuGCGggUACcGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 4843 0.71 0.29765
Target:  5'- -cGGCGUCCGCGCCgCAgccucaagggcGGCGgCCACg -3'
miRNA:   3'- uuCUGCGGGUGCGG-GUa----------CCGCgGGUG- -5'
23589 5' -62.8 NC_005261.1 + 4938 0.75 0.15983
Target:  5'- cGAG-CGCCCGCGCCgCGgcccaGGCGCCCcCg -3'
miRNA:   3'- -UUCuGCGGGUGCGG-GUa----CCGCGGGuG- -5'
23589 5' -62.8 NC_005261.1 + 4993 0.66 0.530894
Target:  5'- gAGGGCGCCgAgGCCCccGG-GCCCc- -3'
miRNA:   3'- -UUCUGCGGgUgCGGGuaCCgCGGGug -5'
23589 5' -62.8 NC_005261.1 + 5123 0.66 0.521265
Target:  5'- -cGGCGCggGCgGCCCGccGGCGCUCGCg -3'
miRNA:   3'- uuCUGCGggUG-CGGGUa-CCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 5429 0.66 0.530894
Target:  5'- gGAGACGaCCGCGgCCGcGGCGgCgGCa -3'
miRNA:   3'- -UUCUGCgGGUGCgGGUaCCGCgGgUG- -5'
23589 5' -62.8 NC_005261.1 + 5558 0.71 0.29362
Target:  5'- gGGGGCGCCCgagcggcggagauggGgGCgCCGagGGCGCCCGCc -3'
miRNA:   3'- -UUCUGCGGG---------------UgCG-GGUa-CCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 6248 0.69 0.355479
Target:  5'- gAGGGCcuGCCCGC-CCCGcggGGCGgCCCGCc -3'
miRNA:   3'- -UUCUG--CGGGUGcGGGUa--CCGC-GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.