miRNA display CGI


Results 1 - 20 of 350 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 5' -62.8 NC_005261.1 + 137892 0.67 0.465088
Target:  5'- -uGcCGCCgC-CGCCCcUGGUGCUCGCg -3'
miRNA:   3'- uuCuGCGG-GuGCGGGuACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 137796 0.71 0.271587
Target:  5'- -cGcCGCCCGCGCCgGcgccgccccUGGUGCUCGCg -3'
miRNA:   3'- uuCuGCGGGUGCGGgU---------ACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 137663 0.67 0.502218
Target:  5'- -cGGCGCCgCGCGaCCCcgGG-GCCCc- -3'
miRNA:   3'- uuCUGCGG-GUGC-GGGuaCCgCGGGug -5'
23589 5' -62.8 NC_005261.1 + 137518 0.7 0.318443
Target:  5'- cAAGAUGgCUGCGCCCAUGGC-CaCCAa -3'
miRNA:   3'- -UUCUGCgGGUGCGGGUACCGcG-GGUg -5'
23589 5' -62.8 NC_005261.1 + 136592 0.7 0.332901
Target:  5'- aGAGACGCCCgGCGCagCGUggagcGGCGCgCGCg -3'
miRNA:   3'- -UUCUGCGGG-UGCGg-GUA-----CCGCGgGUG- -5'
23589 5' -62.8 NC_005261.1 + 135041 0.66 0.520306
Target:  5'- -cGAgGCCgACGCCUgcGGCggcagcgGCCCGCc -3'
miRNA:   3'- uuCUgCGGgUGCGGGuaCCG-------CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 134989 0.68 0.437319
Target:  5'- cGGGGcCGCCgggGCGCCCcUGGCgcggcggGCCCGCa -3'
miRNA:   3'- -UUCU-GCGGg--UGCGGGuACCG-------CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 134863 0.78 0.098638
Target:  5'- cAAGGCGCCCGCGCCCccgcgGGCcCCUGCu -3'
miRNA:   3'- -UUCUGCGGGUGCGGGua---CCGcGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 134243 0.68 0.40378
Target:  5'- -uGGCGCaCGCGCCC-UGcGCGgCCGCg -3'
miRNA:   3'- uuCUGCGgGUGCGGGuAC-CGCgGGUG- -5'
23589 5' -62.8 NC_005261.1 + 134034 0.71 0.259258
Target:  5'- --cGCGCUCGCGgCCAUGGCcGgCCACg -3'
miRNA:   3'- uucUGCGGGUGCgGGUACCG-CgGGUG- -5'
23589 5' -62.8 NC_005261.1 + 133857 0.66 0.560143
Target:  5'- -cGGCGCgcgcgacugCCGCGCCUaccuGUGGUcugcgcaaGCCCGCg -3'
miRNA:   3'- uuCUGCG---------GGUGCGGG----UACCG--------CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 133764 0.68 0.4382
Target:  5'- -cGACGCCCcgugccuccACGCCCucgugcGGCGCaucCCGCc -3'
miRNA:   3'- uuCUGCGGG---------UGCGGGua----CCGCG---GGUG- -5'
23589 5' -62.8 NC_005261.1 + 133279 0.71 0.259258
Target:  5'- cAGGGCGCCgGCGCCCgccucGUGGcCGCCa-- -3'
miRNA:   3'- -UUCUGCGGgUGCGGG-----UACC-GCGGgug -5'
23589 5' -62.8 NC_005261.1 + 132578 0.73 0.219684
Target:  5'- gAAGACGUCggCGCGCCCGcGGaCGCCCGg -3'
miRNA:   3'- -UUCUGCGG--GUGCGGGUaCC-GCGGGUg -5'
23589 5' -62.8 NC_005261.1 + 131929 0.69 0.347835
Target:  5'- -uGGCGCgCGCGggaCCGcGGUGCCCGCg -3'
miRNA:   3'- uuCUGCGgGUGCg--GGUaCCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 131818 0.68 0.420778
Target:  5'- -cGGCGCgCCGcCGCUugaCGcGGCGCCCGCc -3'
miRNA:   3'- uuCUGCG-GGU-GCGG---GUaCCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 131794 0.68 0.395446
Target:  5'- -cGACG-CCGCGCCCGccGCGCCUgACg -3'
miRNA:   3'- uuCUGCgGGUGCGGGUacCGCGGG-UG- -5'
23589 5' -62.8 NC_005261.1 + 131611 0.7 0.311393
Target:  5'- --cGCGCacguaCGCGCgCC-UGGCGCCCGCc -3'
miRNA:   3'- uucUGCGg----GUGCG-GGuACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 131432 0.7 0.318443
Target:  5'- -cGGCGCCgGCGCCCcccuuGCGCCgCGCc -3'
miRNA:   3'- uuCUGCGGgUGCGGGuac--CGCGG-GUG- -5'
23589 5' -62.8 NC_005261.1 + 131216 0.69 0.37112
Target:  5'- --cGCGCCCGCGUaCGUGGCcGCgCGCa -3'
miRNA:   3'- uucUGCGGGUGCGgGUACCG-CGgGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.