miRNA display CGI


Results 21 - 40 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23589 5' -62.8 NC_005261.1 + 8423 0.66 0.540587
Target:  5'- -cGACGCUCACGgCCAcagaccGCGCCCc- -3'
miRNA:   3'- uuCUGCGGGUGCgGGUac----CGCGGGug -5'
23589 5' -62.8 NC_005261.1 + 9667 0.73 0.204362
Target:  5'- cGGGCGCCCA--CCCAaGGaCGCCCACc -3'
miRNA:   3'- uUCUGCGGGUgcGGGUaCC-GCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 9793 0.66 0.530894
Target:  5'- cGAGGugaGCCCAC-CCCAgcUGGCccagcccagcgaGCCCACc -3'
miRNA:   3'- -UUCUg--CGGGUGcGGGU--ACCG------------CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 9880 0.66 0.550338
Target:  5'- -cGGCgaGCCCAcccuagccggccCGCCCggGGCaaGCCCGCc -3'
miRNA:   3'- uuCUG--CGGGU------------GCGGGuaCCG--CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 9937 0.66 0.550338
Target:  5'- -cGGCgaGCCCAcccuagccggccCGCCCggGGCaaGCCCGCc -3'
miRNA:   3'- uuCUG--CGGGU------------GCGGGuaCCG--CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 10217 0.68 0.40378
Target:  5'- cAGG-GCCCGCGCCUGcccaGGCggGCCCGCg -3'
miRNA:   3'- uUCUgCGGGUGCGGGUa---CCG--CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 10266 0.68 0.395446
Target:  5'- -uGGCGCCUucUGCCCugaggacUGGCGCCC-Cg -3'
miRNA:   3'- uuCUGCGGGu-GCGGGu------ACCGCGGGuG- -5'
23589 5' -62.8 NC_005261.1 + 10962 0.69 0.366379
Target:  5'- cAGACGCgugggccgccccgccCCGCGCCCGacUGGCGCUgGu -3'
miRNA:   3'- uUCUGCG---------------GGUGCGGGU--ACCGCGGgUg -5'
23589 5' -62.8 NC_005261.1 + 11880 0.67 0.502218
Target:  5'- cGGGGCGagCC-CGCCCGcacGcGCGCCCGCc -3'
miRNA:   3'- -UUCUGCg-GGuGCGGGUa--C-CGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 11936 0.66 0.511705
Target:  5'- -cGGCgGCCCGCGCCgc-GGCgGCUCGCc -3'
miRNA:   3'- uuCUG-CGGGUGCGGguaCCG-CGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 12079 0.68 0.429437
Target:  5'- -cGGCGUCCGCGCCgG-GGCgGCUCAa -3'
miRNA:   3'- uuCUGCGGGUGCGGgUaCCG-CGGGUg -5'
23589 5' -62.8 NC_005261.1 + 12109 0.77 0.109337
Target:  5'- -cGGCGCCagcucuaGCGCCaggAUGGCGCCCGCc -3'
miRNA:   3'- uuCUGCGGg------UGCGGg--UACCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 13050 0.66 0.521265
Target:  5'- cGGGGcCGCgCGCGCCCcugccgGGCGCguCCGCc -3'
miRNA:   3'- -UUCU-GCGgGUGCGGGua----CCGCG--GGUG- -5'
23589 5' -62.8 NC_005261.1 + 15359 0.68 0.412225
Target:  5'- aAAGACGUCCcggcgGCGCUC--GGCGCCCuCg -3'
miRNA:   3'- -UUCUGCGGG-----UGCGGGuaCCGCGGGuG- -5'
23589 5' -62.8 NC_005261.1 + 16247 0.67 0.502218
Target:  5'- -cGACGUCCGCGCCgG-GGcCGCCgGg -3'
miRNA:   3'- uuCUGCGGGUGCGGgUaCC-GCGGgUg -5'
23589 5' -62.8 NC_005261.1 + 16293 0.66 0.521265
Target:  5'- gGGGGCGCCguCGgGCCCAgcGGCGgCCGg -3'
miRNA:   3'- -UUCUGCGG--GUgCGGGUa-CCGCgGGUg -5'
23589 5' -62.8 NC_005261.1 + 18063 0.75 0.155893
Target:  5'- cGAGuCGUCCAgGCCCAgcucugcGGCGCUCACg -3'
miRNA:   3'- -UUCuGCGGGUgCGGGUa------CCGCGGGUG- -5'
23589 5' -62.8 NC_005261.1 + 18144 0.66 0.521265
Target:  5'- ----gGCCCAguCGCCgAUGGCGUCCu- -3'
miRNA:   3'- uucugCGGGU--GCGGgUACCGCGGGug -5'
23589 5' -62.8 NC_005261.1 + 18514 0.66 0.550338
Target:  5'- uAGACccaGCCCGCGUCaaugacggcGGCGuCCCGCg -3'
miRNA:   3'- uUCUG---CGGGUGCGGgua------CCGC-GGGUG- -5'
23589 5' -62.8 NC_005261.1 + 19299 0.68 0.40378
Target:  5'- -cGACGCCCGCGCuccacacguCCGUGcggcagucguaGCGCgCACg -3'
miRNA:   3'- uuCUGCGGGUGCG---------GGUAC-----------CGCGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.