Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2359 | 3' | -57.9 | NC_001416.1 | + | 5420 | 0.66 | 0.488945 |
Target: 5'- cGAGaaCGCCAGCgCGG-CGCAGCcggACGUg -3' miRNA: 3'- -UUCaaGUGGUCG-GUCgGCGUCG---UGCA- -5' |
|||||||
2359 | 3' | -57.9 | NC_001416.1 | + | 4741 | 0.67 | 0.438217 |
Target: 5'- cGGcUgACCAGCguGCCggacaccgGCAGCACGg -3' miRNA: 3'- uUCaAgUGGUCGguCGG--------CGUCGUGCa -5' |
|||||||
2359 | 3' | -57.9 | NC_001416.1 | + | 2446 | 0.67 | 0.438217 |
Target: 5'- --cUUCAgCAGUCAGCUGCuGCGCu- -3' miRNA: 3'- uucAAGUgGUCGGUCGGCGuCGUGca -5' |
|||||||
2359 | 3' | -57.9 | NC_001416.1 | + | 11138 | 0.67 | 0.438217 |
Target: 5'- -cGUcCAUCAGCCAGagUGUGGCGCGUu -3' miRNA: 3'- uuCAaGUGGUCGGUCg-GCGUCGUGCA- -5' |
|||||||
2359 | 3' | -57.9 | NC_001416.1 | + | 5310 | 0.74 | 0.140495 |
Target: 5'- cAAGUUCAUCAGCCAGUC-CGGCAUc- -3' miRNA: 3'- -UUCAAGUGGUCGGUCGGcGUCGUGca -5' |
|||||||
2359 | 3' | -57.9 | NC_001416.1 | + | 24235 | 1.04 | 0.000741 |
Target: 5'- gAAGUUCACCAGCCAGCCGCAGCACGUu -3' miRNA: 3'- -UUCAAGUGGUCGGUCGGCGUCGUGCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home