miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 3' -54.9 NC_005261.1 + 13129 0.69 0.824026
Target:  5'- cGCGGG-GCGcguguGGUCGGUGAcGGcGCGc -3'
miRNA:   3'- uCGCCCaCGC-----UCAGCUACUaUCuCGC- -5'
23590 3' -54.9 NC_005261.1 + 26876 0.69 0.806459
Target:  5'- gGGCGGGgGUGGGUgGggGGgggcgGGGGCGc -3'
miRNA:   3'- -UCGCCCaCGCUCAgCuaCUa----UCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 1014 0.69 0.797429
Target:  5'- gGGCGGGggGCGGGUgGGcuuuUGcggAGGGCGg -3'
miRNA:   3'- -UCGCCCa-CGCUCAgCU----ACua-UCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 65792 0.69 0.788246
Target:  5'- cGGCGGGaacauccGCGGGUCGG-GGUGcccGGGCGg -3'
miRNA:   3'- -UCGCCCa------CGCUCAGCUaCUAU---CUCGC- -5'
23590 3' -54.9 NC_005261.1 + 128074 0.69 0.788246
Target:  5'- gGGCGGGcggGCGAG-CGAgcgGGUuaacGGGCGa -3'
miRNA:   3'- -UCGCCCa--CGCUCaGCUa--CUAu---CUCGC- -5'
23590 3' -54.9 NC_005261.1 + 56136 0.69 0.778919
Target:  5'- gGGCGGGgggcGCGGGcCGAgGGUGGcggcAGCGg -3'
miRNA:   3'- -UCGCCCa---CGCUCaGCUaCUAUC----UCGC- -5'
23590 3' -54.9 NC_005261.1 + 35254 0.7 0.73045
Target:  5'- cGGCGGGaUGgGAGgcagUGGUGGUGacGGGCGg -3'
miRNA:   3'- -UCGCCC-ACgCUCa---GCUACUAU--CUCGC- -5'
23590 3' -54.9 NC_005261.1 + 92697 0.71 0.710385
Target:  5'- gAGCGGGaGCGGGagCGG-GAgcgGGAGCGg -3'
miRNA:   3'- -UCGCCCaCGCUCa-GCUaCUa--UCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 34486 0.72 0.638499
Target:  5'- cGGCGGGUGCugGAGUgGGUcg-AGGGCGc -3'
miRNA:   3'- -UCGCCCACG--CUCAgCUAcuaUCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 134880 0.76 0.430641
Target:  5'- cGCGGGccccugcugUGCGu-UCGGUGGUGGAGCGg -3'
miRNA:   3'- uCGCCC---------ACGCucAGCUACUAUCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 101316 1.08 0.003957
Target:  5'- uAGCGGGUGCGAGUCGAUGAUAGAGCGc -3'
miRNA:   3'- -UCGCCCACGCUCAGCUACUAUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.