Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23590 | 3' | -54.9 | NC_005261.1 | + | 98912 | 0.68 | 0.864681 |
Target: 5'- cAGCGGGUcgGCgGGGUCGGcUGcggGGGGCa -3' miRNA: 3'- -UCGCCCA--CG-CUCAGCU-ACua-UCUCGc -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 101316 | 1.08 | 0.003957 |
Target: 5'- uAGCGGGUGCGAGUCGAUGAUAGAGCGc -3' miRNA: 3'- -UCGCCCACGCUCAGCUACUAUCUCGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 105002 | 0.67 | 0.893392 |
Target: 5'- cGCGGGcgGCG-GUCGggGcgccAGGGCGg -3' miRNA: 3'- uCGCCCa-CGCuCAGCuaCua--UCUCGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 116485 | 0.67 | 0.879488 |
Target: 5'- gGGCGGG-GCGGGcgCGcgGuAUaaAGAGCGc -3' miRNA: 3'- -UCGCCCaCGCUCa-GCuaC-UA--UCUCGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 121135 | 0.68 | 0.864681 |
Target: 5'- cGCGGGcGCGAGcgCGAguaggaccgGGUAGGGUu -3' miRNA: 3'- uCGCCCaCGCUCa-GCUa--------CUAUCUCGc -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 121440 | 0.67 | 0.879488 |
Target: 5'- cGGCGGG-GCGGgcauggggccGUCGAUGGc-GAGCu -3' miRNA: 3'- -UCGCCCaCGCU----------CAGCUACUauCUCGc -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 121503 | 0.67 | 0.879488 |
Target: 5'- cGGCGGG-GCGGgcauggggccGUCGAUGGc-GAGCu -3' miRNA: 3'- -UCGCCCaCGCU----------CAGCUACUauCUCGc -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 127749 | 0.67 | 0.879488 |
Target: 5'- cGGCGGGaGCGGGcCGcgGcgGGcGCGa -3' miRNA: 3'- -UCGCCCaCGCUCaGCuaCuaUCuCGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 128074 | 0.69 | 0.788246 |
Target: 5'- gGGCGGGcggGCGAG-CGAgcgGGUuaacGGGCGa -3' miRNA: 3'- -UCGCCCa--CGCUCaGCUa--CUAu---CUCGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 134880 | 0.76 | 0.430641 |
Target: 5'- cGCGGGccccugcugUGCGu-UCGGUGGUGGAGCGg -3' miRNA: 3'- uCGCCC---------ACGCucAGCUACUAUCUCGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 134938 | 0.66 | 0.929397 |
Target: 5'- cGCGGaG-GaCGAGcCGAUGGgcgAGGGCGc -3' miRNA: 3'- uCGCC-CaC-GCUCaGCUACUa--UCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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