miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 3' -54.9 NC_005261.1 + 34486 0.72 0.638499
Target:  5'- cGGCGGGUGCugGAGUgGGUcg-AGGGCGc -3'
miRNA:   3'- -UCGCCCACG--CUCAgCUAcuaUCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 32920 0.68 0.849016
Target:  5'- cGUGGGgggcgGCGGG-CGggGggGGGGCGg -3'
miRNA:   3'- uCGCCCa----CGCUCaGCuaCuaUCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 26876 0.69 0.806459
Target:  5'- gGGCGGGgGUGGGUgGggGGgggcgGGGGCGc -3'
miRNA:   3'- -UCGCCCaCGCUCAgCuaCUa----UCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 19110 0.68 0.840878
Target:  5'- uGCGGGUcaGCcGGUCGGUGGggcUAG-GCGg -3'
miRNA:   3'- uCGCCCA--CGcUCAGCUACU---AUCuCGC- -5'
23590 3' -54.9 NC_005261.1 + 17132 0.67 0.879488
Target:  5'- cGGCGGGUacgccgGCGGGUCGAc-GUAGAccgucacccGCGg -3'
miRNA:   3'- -UCGCCCA------CGCUCAGCUacUAUCU---------CGC- -5'
23590 3' -54.9 NC_005261.1 + 15505 0.66 0.918367
Target:  5'- gGGCGGG-GCGuguGUCGGcgUGcaggcaGGAGCGg -3'
miRNA:   3'- -UCGCCCaCGCu--CAGCU--ACua----UCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 13670 0.68 0.864681
Target:  5'- cGCGGGgggggcGCGGGgcgCGcgGGcgUGGGGCGg -3'
miRNA:   3'- uCGCCCa-----CGCUCa--GCuaCU--AUCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 13129 0.69 0.824026
Target:  5'- cGCGGG-GCGcguguGGUCGGUGAcGGcGCGc -3'
miRNA:   3'- uCGCCCaCGC-----UCAGCUACUaUCuCGC- -5'
23590 3' -54.9 NC_005261.1 + 13092 0.68 0.832545
Target:  5'- cGGCGGGcgGCGGGcUCGGcucgGGGGCGu -3'
miRNA:   3'- -UCGCCCa-CGCUC-AGCUacuaUCUCGC- -5'
23590 3' -54.9 NC_005261.1 + 12748 0.67 0.893392
Target:  5'- gGGCGGGcccgGCGAGgucguaggcggCGGUGGcggGGGGCu -3'
miRNA:   3'- -UCGCCCa---CGCUCa----------GCUACUa--UCUCGc -5'
23590 3' -54.9 NC_005261.1 + 1014 0.69 0.797429
Target:  5'- gGGCGGGggGCGGGUgGGcuuuUGcggAGGGCGg -3'
miRNA:   3'- -UCGCCCa-CGCUCAgCU----ACua-UCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.