Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23590 | 3' | -54.9 | NC_005261.1 | + | 80063 | 0.67 | 0.893392 |
Target: 5'- cGGCGGGcGCGGGgggCG-UGggGGAcGCGg -3' miRNA: 3'- -UCGCCCaCGCUCa--GCuACuaUCU-CGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 12748 | 0.67 | 0.893392 |
Target: 5'- gGGCGGGcccgGCGAGgucguaggcggCGGUGGcggGGGGCu -3' miRNA: 3'- -UCGCCCa---CGCUCa----------GCUACUa--UCUCGc -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 127749 | 0.67 | 0.879488 |
Target: 5'- cGGCGGGaGCGGGcCGcgGcgGGcGCGa -3' miRNA: 3'- -UCGCCCaCGCUCaGCuaCuaUCuCGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 121503 | 0.67 | 0.879488 |
Target: 5'- cGGCGGG-GCGGgcauggggccGUCGAUGGc-GAGCu -3' miRNA: 3'- -UCGCCCaCGCU----------CAGCUACUauCUCGc -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 121440 | 0.67 | 0.879488 |
Target: 5'- cGGCGGG-GCGGgcauggggccGUCGAUGGc-GAGCu -3' miRNA: 3'- -UCGCCCaCGCU----------CAGCUACUauCUCGc -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 116485 | 0.67 | 0.879488 |
Target: 5'- gGGCGGG-GCGGGcgCGcgGuAUaaAGAGCGc -3' miRNA: 3'- -UCGCCCaCGCUCa-GCuaC-UA--UCUCGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 92727 | 0.67 | 0.879488 |
Target: 5'- gAGCGGGaGCGGGgCGggGAcagcGAGCGc -3' miRNA: 3'- -UCGCCCaCGCUCaGCuaCUau--CUCGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 17132 | 0.67 | 0.879488 |
Target: 5'- cGGCGGGUacgccgGCGGGUCGAc-GUAGAccgucacccGCGg -3' miRNA: 3'- -UCGCCCA------CGCUCAGCUacUAUCU---------CGC- -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 39735 | 0.67 | 0.879488 |
Target: 5'- gGGCGGGUGCcccAGUCGcgGAUcucGGCc -3' miRNA: 3'- -UCGCCCACGc--UCAGCuaCUAuc-UCGc -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 121135 | 0.68 | 0.864681 |
Target: 5'- cGCGGGcGCGAGcgCGAguaggaccgGGUAGGGUu -3' miRNA: 3'- uCGCCCaCGCUCa-GCUa--------CUAUCUCGc -5' |
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23590 | 3' | -54.9 | NC_005261.1 | + | 101316 | 1.08 | 0.003957 |
Target: 5'- uAGCGGGUGCGAGUCGAUGAUAGAGCGc -3' miRNA: 3'- -UCGCCCACGCUCAGCUACUAUCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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