miRNA display CGI


Results 61 - 80 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 12346 0.76 0.216785
Target:  5'- cGCgGCcgCCGCCGCGGCgGCaaCCGGCg -3'
miRNA:   3'- -CGgUGa-GGUGGCGCCGgUGcaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 86728 0.76 0.22148
Target:  5'- cGCCGCcucgUCCGCCGCgcccugcaucaucGGCCAguCGUCCAGg -3'
miRNA:   3'- -CGGUG----AGGUGGCG-------------CCGGU--GCAGGUCg -5'
23590 5' -60.4 NC_005261.1 + 30042 0.76 0.222007
Target:  5'- gGCCGCggccugCCgGCCGCGGCCuGCGcUCCAGa -3'
miRNA:   3'- -CGGUGa-----GG-UGGCGCCGG-UGC-AGGUCg -5'
23590 5' -60.4 NC_005261.1 + 121822 0.76 0.222007
Target:  5'- gGCUcuGCgggCCGCCGCGGCgGCGcaCCGGCg -3'
miRNA:   3'- -CGG--UGa--GGUGGCGCCGgUGCa-GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 53554 0.76 0.222535
Target:  5'- gGCCGCgCCGCggcccaggcgcacuaGCGGCCGCGggCCGGCg -3'
miRNA:   3'- -CGGUGaGGUGg--------------CGCCGGUGCa-GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 135561 0.76 0.225725
Target:  5'- uGCCccugcgcaccaaggACcCCAUCGUGGCCACGgCCGGCg -3'
miRNA:   3'- -CGG--------------UGaGGUGGCGCCGGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 103271 0.76 0.227334
Target:  5'- aGCCGCUCCAgCGCGccggguGCCGCG-CgCAGCc -3'
miRNA:   3'- -CGGUGAGGUgGCGC------CGGUGCaG-GUCG- -5'
23590 5' -60.4 NC_005261.1 + 46106 0.76 0.227334
Target:  5'- gGCCGggg-GCCGUGGuCCGCGUCCAGCa -3'
miRNA:   3'- -CGGUgaggUGGCGCC-GGUGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 62224 0.76 0.227334
Target:  5'- gGCCGCgucugcgCCcUCGCGGUgcugCACGUCCGGCg -3'
miRNA:   3'- -CGGUGa------GGuGGCGCCG----GUGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 107143 0.76 0.227334
Target:  5'- cCCACg--GCCGCGGCCAUGgaggcggCCAGCg -3'
miRNA:   3'- cGGUGaggUGGCGCCGGUGCa------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 2938 0.76 0.227334
Target:  5'- uCCA--CCGCCGCGGCCGgGcUCCGGCc -3'
miRNA:   3'- cGGUgaGGUGGCGCCGGUgC-AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 122373 0.75 0.23277
Target:  5'- cGCgGCcCCACCGCGGCCugGgggcgcuugCCAaGCu -3'
miRNA:   3'- -CGgUGaGGUGGCGCCGGugCa--------GGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 97117 0.75 0.23277
Target:  5'- gGCCGCggCCggaggcGCCGCGGCCACGcUCggaGGCg -3'
miRNA:   3'- -CGGUGa-GG------UGGCGCCGGUGC-AGg--UCG- -5'
23590 5' -60.4 NC_005261.1 + 10125 0.75 0.23277
Target:  5'- aGCCACcaCCACCGCcgccaugaGCCACGgCCAGCc -3'
miRNA:   3'- -CGGUGa-GGUGGCGc-------CGGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 100083 0.75 0.23277
Target:  5'- cGCCGCgccccucgccgCCGCCGCuGCCGcCGcCCAGCg -3'
miRNA:   3'- -CGGUGa----------GGUGGCGcCGGU-GCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 97195 0.75 0.23277
Target:  5'- gGCCGCggCCggaagcGCCGCGGCCACGcUCggaGGCg -3'
miRNA:   3'- -CGGUGa-GG------UGGCGCCGGUGC-AGg--UCG- -5'
23590 5' -60.4 NC_005261.1 + 5996 0.75 0.23277
Target:  5'- uCCGCUCCucCCGCGGCgAgGgcUCCGGCg -3'
miRNA:   3'- cGGUGAGGu-GGCGCCGgUgC--AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 106331 0.75 0.23277
Target:  5'- aGCCACggCC-CCGCcGCCGCGUCC-GCc -3'
miRNA:   3'- -CGGUGa-GGuGGCGcCGGUGCAGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 64263 0.75 0.237755
Target:  5'- cGCCAUcaucagCaCGCCGUGgugcagcGCCGCGUCCAGCg -3'
miRNA:   3'- -CGGUGa-----G-GUGGCGC-------CGGUGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 66019 0.75 0.238315
Target:  5'- cGCCACcgCCGgcgcgucguaguCgGCGGCCACGgCCAGCc -3'
miRNA:   3'- -CGGUGa-GGU------------GgCGCCGGUGCaGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.