miRNA display CGI


Results 41 - 60 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 5104 0.75 0.261604
Target:  5'- cGCCacaGCUCCGCCagcucggcgcggGCGGCC-CG-CCGGCg -3'
miRNA:   3'- -CGG---UGAGGUGG------------CGCCGGuGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 5147 0.71 0.448835
Target:  5'- cGCgCGcCUCgGCCcgGCgGGCCGCGUCgAGCa -3'
miRNA:   3'- -CG-GU-GAGgUGG--CG-CCGGUGCAGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 5416 0.74 0.285412
Target:  5'- cGCCGCgaacgaaggagaCgACCGCGGCCGCGg-CGGCg -3'
miRNA:   3'- -CGGUGa-----------GgUGGCGCCGGUGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 5996 0.75 0.23277
Target:  5'- uCCGCUCCucCCGCGGCgAgGgcUCCGGCg -3'
miRNA:   3'- cGGUGAGGu-GGCGCCGgUgC--AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 6333 0.67 0.679859
Target:  5'- gGCCGCguacccccugcCCACCGgccuCGcGCCG-GUCCGGCg -3'
miRNA:   3'- -CGGUGa----------GGUGGC----GC-CGGUgCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 7626 0.74 0.293278
Target:  5'- uGCCucuGCUgCCGCCGCuGCCGCGUCU-GCu -3'
miRNA:   3'- -CGG---UGA-GGUGGCGcCGGUGCAGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 7658 0.66 0.737981
Target:  5'- uUCGCUUCaagcgGCCGCGGCCGcCG-CCuGUg -3'
miRNA:   3'- cGGUGAGG-----UGGCGCCGGU-GCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 7747 0.68 0.600558
Target:  5'- cCCGCUCCACCcuGCGGUC-CGgCCGuGUg -3'
miRNA:   3'- cGGUGAGGUGG--CGCCGGuGCaGGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 9727 0.69 0.522591
Target:  5'- -gCGCUCCGCCGCGacuaGCC-CGcCCGGa -3'
miRNA:   3'- cgGUGAGGUGGCGC----CGGuGCaGGUCg -5'
23590 5' -60.4 NC_005261.1 + 10125 0.75 0.23277
Target:  5'- aGCCACcaCCACCGCcgccaugaGCCACGgCCAGCc -3'
miRNA:   3'- -CGGUGa-GGUGGCGc-------CGGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 10244 0.69 0.561205
Target:  5'- cGCgCACUcgCCGCCGCgGGCCugGcgCCuucuGCc -3'
miRNA:   3'- -CG-GUGA--GGUGGCG-CCGGugCa-GGu---CG- -5'
23590 5' -60.4 NC_005261.1 + 10569 0.66 0.727506
Target:  5'- cCCACUCUuugggGCCgaaugcgacgugaGCGGCaGCGacUCCAGCa -3'
miRNA:   3'- cGGUGAGG-----UGG-------------CGCCGgUGC--AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 10909 0.66 0.718865
Target:  5'- gGCgGCagcgCCGCCGcCGGCCGCGacaacccccuUCUcGCg -3'
miRNA:   3'- -CGgUGa---GGUGGC-GCCGGUGC----------AGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 11021 0.66 0.709197
Target:  5'- gGCCucgUCGCCG-GGCC-CGUCCcccGGCg -3'
miRNA:   3'- -CGGugaGGUGGCgCCGGuGCAGG---UCG- -5'
23590 5' -60.4 NC_005261.1 + 11899 0.72 0.373235
Target:  5'- cGCgCGC-CCGCCGCgGGCC-CGgcccggCCGGCg -3'
miRNA:   3'- -CG-GUGaGGUGGCG-CCGGuGCa-----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 11946 0.73 0.327868
Target:  5'- cGCCGCggcggCuCGCC-CGGCgCGCGcUCCAGCg -3'
miRNA:   3'- -CGGUGa----G-GUGGcGCCG-GUGC-AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 12137 0.71 0.431298
Target:  5'- cCCGCcgCCGCgGCGGCCGCG-CaGGCc -3'
miRNA:   3'- cGGUGa-GGUGgCGCCGGUGCaGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 12215 0.68 0.600558
Target:  5'- uGCCGCcgCCGCUGCuGCCGCc-CCAuGCg -3'
miRNA:   3'- -CGGUGa-GGUGGCGcCGGUGcaGGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 12293 0.79 0.139533
Target:  5'- uCCGCgUCCGCCGCGGgCACGggcgcguagCCGGCg -3'
miRNA:   3'- cGGUG-AGGUGGCGCCgGUGCa--------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 12346 0.76 0.216785
Target:  5'- cGCgGCcgCCGCCGCGGCgGCaaCCGGCg -3'
miRNA:   3'- -CGgUGa-GGUGGCGCCGgUGcaGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.