miRNA display CGI


Results 61 - 80 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 12623 0.73 0.327868
Target:  5'- cGCCACcacgguguagUCCGgCGCGGUCugGggccgcgCCGGCg -3'
miRNA:   3'- -CGGUG----------AGGUgGCGCCGGugCa------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 13053 0.66 0.699468
Target:  5'- gGCCGCgcgcgCCcCUGcCGGgCGCGUCCgccGGCc -3'
miRNA:   3'- -CGGUGa----GGuGGC-GCCgGUGCAGG---UCG- -5'
23590 5' -60.4 NC_005261.1 + 13329 0.69 0.561205
Target:  5'- cGCC-CUCgCACucgCGCGGCCAgCGgUCGGCg -3'
miRNA:   3'- -CGGuGAG-GUG---GCGCCGGU-GCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 13899 0.73 0.335138
Target:  5'- cGCCGCcgUCCuCCuCGGUCACGUCC-GCg -3'
miRNA:   3'- -CGGUG--AGGuGGcGCCGGUGCAGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 14043 0.76 0.216785
Target:  5'- gGCCAUgcgagcggUCCGCagGCaGGCCGCGUCCAGg -3'
miRNA:   3'- -CGGUG--------AGGUGg-CG-CCGGUGCAGGUCg -5'
23590 5' -60.4 NC_005261.1 + 14155 0.7 0.466758
Target:  5'- -aCGCUCCAgCCGCgaacGGCgCGCGUCUcggGGCg -3'
miRNA:   3'- cgGUGAGGU-GGCG----CCG-GUGCAGG---UCG- -5'
23590 5' -60.4 NC_005261.1 + 14353 0.66 0.728462
Target:  5'- aGCgGCagCAgCCGCGGCCGgGg-CGGCg -3'
miRNA:   3'- -CGgUGagGU-GGCGCCGGUgCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 14795 0.7 0.485045
Target:  5'- uGCCGCUcCCGCagGCuGCgCACGUCCgcGGCu -3'
miRNA:   3'- -CGGUGA-GGUGg-CGcCG-GUGCAGG--UCG- -5'
23590 5' -60.4 NC_005261.1 + 14969 0.72 0.365385
Target:  5'- uGCCuggggcgaCugCGCGGCCGCG-CCGGCc -3'
miRNA:   3'- -CGGugag----GugGCGCCGGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 15275 0.69 0.532156
Target:  5'- gGCgGCgCCGCCGgGGCgCGCgGUCgCGGCc -3'
miRNA:   3'- -CGgUGaGGUGGCgCCG-GUG-CAG-GUCG- -5'
23590 5' -60.4 NC_005261.1 + 15492 0.67 0.669994
Target:  5'- cGCCGCU-CGCUGCGGgCgggGCGUgugUCGGCg -3'
miRNA:   3'- -CGGUGAgGUGGCGCCgG---UGCA---GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 15794 0.67 0.669994
Target:  5'- cGCCGC-CCG-CGCGGCCAgCG-CC-GCc -3'
miRNA:   3'- -CGGUGaGGUgGCGCCGGU-GCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 16113 0.74 0.293278
Target:  5'- gGCCACgcacgcgaUCACCGCGGCCGCGaugCCGa- -3'
miRNA:   3'- -CGGUGa-------GGUGGCGCCGGUGCa--GGUcg -5'
23590 5' -60.4 NC_005261.1 + 16256 0.71 0.405763
Target:  5'- cGCCGgggCCGCCGgGGCCGgGcUUCGGCu -3'
miRNA:   3'- -CGGUga-GGUGGCgCCGGUgC-AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 16741 0.67 0.669994
Target:  5'- aGCCGCgCgGgCGCcGCCAUGaCCAGCc -3'
miRNA:   3'- -CGGUGaGgUgGCGcCGGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 16979 0.66 0.718865
Target:  5'- -gCGCcCCACCuGCGGguCCGCGaUCAGCg -3'
miRNA:   3'- cgGUGaGGUGG-CGCC--GGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 17103 0.67 0.660101
Target:  5'- uGCCagcGCUCgauguaguugUAUCGCGGCgGCGgguacgCCGGCg -3'
miRNA:   3'- -CGG---UGAG----------GUGGCGCCGgUGCa-----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 17187 0.71 0.405763
Target:  5'- aGCC-CUgCCGCgGCGGCgagcagCGCGcCCAGCa -3'
miRNA:   3'- -CGGuGA-GGUGgCGCCG------GUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 17780 0.68 0.610467
Target:  5'- aCCACUaCCACCGCcGCCAacaucuCG-CCGGUc -3'
miRNA:   3'- cGGUGA-GGUGGCGcCGGU------GCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 18395 0.66 0.718865
Target:  5'- aGCCGCUgCGgaCGCgGGCCuCGgagaccCCAGCg -3'
miRNA:   3'- -CGGUGAgGUg-GCG-CCGGuGCa-----GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.