miRNA display CGI


Results 41 - 60 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 125856 0.66 0.709197
Target:  5'- aGCCaaggcggcaaACUCgGCCGgGGCgGCGcCCuuGGCu -3'
miRNA:   3'- -CGG----------UGAGgUGGCgCCGgUGCaGG--UCG- -5'
23590 5' -60.4 NC_005261.1 + 125719 0.67 0.683795
Target:  5'- cGCCGCgggcucggcuggggCCGCCGCaagggGGCCGgGgCCAGg -3'
miRNA:   3'- -CGGUGa-------------GGUGGCG-----CCGGUgCaGGUCg -5'
23590 5' -60.4 NC_005261.1 + 125679 0.66 0.718865
Target:  5'- uGCCGCcgaaugggUuuGCCG-GGCUugGcCCGGCg -3'
miRNA:   3'- -CGGUG--------AggUGGCgCCGGugCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 125610 0.68 0.570989
Target:  5'- cGCCACUgC-CCGCccGCCcuuagaaGUCCAGCa -3'
miRNA:   3'- -CGGUGAgGuGGCGc-CGGug-----CAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 125295 0.73 0.318592
Target:  5'- gGCCGCgggcgCCGgacccgcgggcgcuCCGCGGCCucgGCGUCCgcAGCg -3'
miRNA:   3'- -CGGUGa----GGU--------------GGCGCCGG---UGCAGG--UCG- -5'
23590 5' -60.4 NC_005261.1 + 124924 0.71 0.422681
Target:  5'- aGCCgcggagGCUCCGCCGCGcGCgcUGUgCCGGCg -3'
miRNA:   3'- -CGG------UGAGGUGGCGC-CGguGCA-GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 124749 0.72 0.3812
Target:  5'- cCCGCagCCGCaGCGGCCGCcUCCAGg -3'
miRNA:   3'- cGGUGa-GGUGgCGCCGGUGcAGGUCg -5'
23590 5' -60.4 NC_005261.1 + 124573 0.7 0.466758
Target:  5'- cGCCGCUCgcgcaccacgCGCUgaucguuggGCGGCgugcggcauagCGCGUCCAGCg -3'
miRNA:   3'- -CGGUGAG----------GUGG---------CGCCG-----------GUGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 124425 0.73 0.350029
Target:  5'- gGCCuGCUUCAUCGCGcGCCGCcacaCCAGCc -3'
miRNA:   3'- -CGG-UGAGGUGGCGC-CGGUGca--GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 124234 0.66 0.728462
Target:  5'- aGCCcaACcgCCGCCGCGGgCAgGcgCCGcGCg -3'
miRNA:   3'- -CGG--UGa-GGUGGCGCCgGUgCa-GGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 123820 0.7 0.485045
Target:  5'- aCCGuCUCCACUuCGGCguCGUgCAGCg -3'
miRNA:   3'- cGGU-GAGGUGGcGCCGguGCAgGUCG- -5'
23590 5' -60.4 NC_005261.1 + 123472 0.66 0.707256
Target:  5'- gGCCucccagaACUCCACCagggacaccggGCGcaccagcggcaguGCCGCGUCCgcuAGCa -3'
miRNA:   3'- -CGG-------UGAGGUGG-----------CGC-------------CGGUGCAGG---UCG- -5'
23590 5' -60.4 NC_005261.1 + 123332 0.7 0.488743
Target:  5'- gGCCGCgaaccuagCgGCuCGCGGCCgaccagcgccucuauGCuGUCCAGCg -3'
miRNA:   3'- -CGGUGa-------GgUG-GCGCCGG---------------UG-CAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 123211 0.68 0.620392
Target:  5'- cGCCGCguaAgCGCGGCCugcCGcCUAGCg -3'
miRNA:   3'- -CGGUGaggUgGCGCCGGu--GCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 123097 0.68 0.570989
Target:  5'- cGCCAUUUCGCCGCGGCgggaaagugGCGcUUGGCa -3'
miRNA:   3'- -CGGUGAGGUGGCGCCGg--------UGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 123001 0.83 0.077577
Target:  5'- gGCCACUaCgGCCGCGGCCgugGCGUCCgcgAGCg -3'
miRNA:   3'- -CGGUGA-GgUGGCGCCGG---UGCAGG---UCG- -5'
23590 5' -60.4 NC_005261.1 + 122832 0.66 0.699468
Target:  5'- -gCGCUgCGgCGCGGUCAUacUCCAGCc -3'
miRNA:   3'- cgGUGAgGUgGCGCCGGUGc-AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 122693 0.69 0.513093
Target:  5'- cGCCuGCUCCAUCGCcgcgccgccGGCCGCG-CCGu- -3'
miRNA:   3'- -CGG-UGAGGUGGCG---------CCGGUGCaGGUcg -5'
23590 5' -60.4 NC_005261.1 + 122580 0.66 0.699468
Target:  5'- cGCaGCUCCGCCgcaGCGGCCuuguACG-CC-GCg -3'
miRNA:   3'- -CGgUGAGGUGG---CGCCGG----UGCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 122373 0.75 0.23277
Target:  5'- cGCgGCcCCACCGCGGCCugGgggcgcuugCCAaGCu -3'
miRNA:   3'- -CGgUGaGGUGGCGCCGGugCa--------GGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.