Results 41 - 60 of 607 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23590 | 5' | -60.4 | NC_005261.1 | + | 7658 | 0.66 | 0.737981 |
Target: 5'- uUCGCUUCaagcgGCCGCGGCCGcCG-CCuGUg -3' miRNA: 3'- cGGUGAGG-----UGGCGCCGGU-GCaGGuCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 32668 | 0.66 | 0.737981 |
Target: 5'- cGCCGCUaacgCCGCCGCccGCCGCccUCC-GCa -3' miRNA: 3'- -CGGUGA----GGUGGCGc-CGGUGc-AGGuCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 55854 | 0.66 | 0.737981 |
Target: 5'- uCCGCgCCGgCGCGGaCCAaGUCCAcgacGCg -3' miRNA: 3'- cGGUGaGGUgGCGCC-GGUgCAGGU----CG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 97916 | 0.66 | 0.737981 |
Target: 5'- cGCCggGCguccCCGCUGUacuGGCCGCcagcUCCGGCg -3' miRNA: 3'- -CGG--UGa---GGUGGCG---CCGGUGc---AGGUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 118436 | 0.66 | 0.737981 |
Target: 5'- cGCCGCggacgCCGCCGCGGCgcuagaagaCACuugCCAu- -3' miRNA: 3'- -CGGUGa----GGUGGCGCCG---------GUGca-GGUcg -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 66758 | 0.66 | 0.728462 |
Target: 5'- gGCUGgUCCACCggguGUGGCC-CGUCgCGcGCg -3' miRNA: 3'- -CGGUgAGGUGG----CGCCGGuGCAG-GU-CG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 14353 | 0.66 | 0.728462 |
Target: 5'- aGCgGCagCAgCCGCGGCCGgGg-CGGCg -3' miRNA: 3'- -CGgUGagGU-GGCGCCGGUgCagGUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 101900 | 0.66 | 0.718865 |
Target: 5'- cGCgCGCUCCuCCuCGaaaGCCGCGUgcccCCGGCg -3' miRNA: 3'- -CG-GUGAGGuGGcGC---CGGUGCA----GGUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 121412 | 0.66 | 0.718865 |
Target: 5'- uGCgACggcugCCGCCGCcGCUACGgggCGGCg -3' miRNA: 3'- -CGgUGa----GGUGGCGcCGGUGCag-GUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 125679 | 0.66 | 0.718865 |
Target: 5'- uGCCGCcgaaugggUuuGCCG-GGCUugGcCCGGCg -3' miRNA: 3'- -CGGUG--------AggUGGCgCCGGugCaGGUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 127327 | 0.66 | 0.718865 |
Target: 5'- uGCCGC-CCGCgGgGGCCG-GagCGGCg -3' miRNA: 3'- -CGGUGaGGUGgCgCCGGUgCagGUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 10909 | 0.66 | 0.718865 |
Target: 5'- gGCgGCagcgCCGCCGcCGGCCGCGacaacccccuUCUcGCg -3' miRNA: 3'- -CGgUGa---GGUGGC-GCCGGUGC----------AGGuCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 18395 | 0.66 | 0.718865 |
Target: 5'- aGCCGCUgCGgaCGCgGGCCuCGgagaccCCAGCg -3' miRNA: 3'- -CGGUGAgGUg-GCG-CCGGuGCa-----GGUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 68131 | 0.66 | 0.718865 |
Target: 5'- gGCCGCggCGCgGCGaCCGCGccguggCCGGCu -3' miRNA: 3'- -CGGUGagGUGgCGCcGGUGCa-----GGUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 70552 | 0.66 | 0.718865 |
Target: 5'- cCCAC-CCGCCGCagggcGCCGCGaagagcUCgGGCg -3' miRNA: 3'- cGGUGaGGUGGCGc----CGGUGC------AGgUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 74954 | 0.66 | 0.718865 |
Target: 5'- gGCgCGCUCgGCgCGCucgaGGCCGCGcgCCcGCg -3' miRNA: 3'- -CG-GUGAGgUG-GCG----CCGGUGCa-GGuCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 106374 | 0.66 | 0.718865 |
Target: 5'- cGCCGCcgUCGCCGuuGCCGCcgcugUCGGCg -3' miRNA: 3'- -CGGUGa-GGUGGCgcCGGUGca---GGUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 4486 | 0.66 | 0.722712 |
Target: 5'- cGCCGCggcguagCCugCGCGGgccccagucgcgcgcCCGCG-CgGGCg -3' miRNA: 3'- -CGGUGa------GGugGCGCC---------------GGUGCaGgUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 27482 | 0.66 | 0.725591 |
Target: 5'- gGCC-CUCCccgggcgcaccuggACCGCcaGGUCugGgcgggCCAGCu -3' miRNA: 3'- -CGGuGAGG--------------UGGCG--CCGGugCa----GGUCG- -5' |
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23590 | 5' | -60.4 | NC_005261.1 | + | 10569 | 0.66 | 0.727506 |
Target: 5'- cCCACUCUuugggGCCgaaugcgacgugaGCGGCaGCGacUCCAGCa -3' miRNA: 3'- cGGUGAGG-----UGG-------------CGCCGgUGC--AGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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