miRNA display CGI


Results 81 - 100 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 92560 0.66 0.709197
Target:  5'- cCCGCgcgcgCC-CCGCGcGCCGCGcgcCCAcGCg -3'
miRNA:   3'- cGGUGa----GGuGGCGC-CGGUGCa--GGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 77647 0.66 0.709197
Target:  5'- cGCCA--UCGCCGaCGGCCGgCG-CCuGCa -3'
miRNA:   3'- -CGGUgaGGUGGC-GCCGGU-GCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 73142 0.66 0.709197
Target:  5'- gGCCggGCUCgCGCCGCcaGGCgGCGUuguugcUCGGCc -3'
miRNA:   3'- -CGG--UGAG-GUGGCG--CCGgUGCA------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 62116 0.66 0.709197
Target:  5'- gGCCACgCCGucCUGCaGGCCcuGCGU-CAGCa -3'
miRNA:   3'- -CGGUGaGGU--GGCG-CCGG--UGCAgGUCG- -5'
23590 5' -60.4 NC_005261.1 + 31027 0.66 0.709197
Target:  5'- gGCCAaaagCCGgCGCGccGCCGgGUCCccAGCg -3'
miRNA:   3'- -CGGUga--GGUgGCGC--CGGUgCAGG--UCG- -5'
23590 5' -60.4 NC_005261.1 + 21653 0.66 0.709197
Target:  5'- cGCCGCUgCCgcACCGcCGG-UACGugcUCCGGCu -3'
miRNA:   3'- -CGGUGA-GG--UGGC-GCCgGUGC---AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 108545 0.66 0.709197
Target:  5'- gGCCAgcgCCGCCGacacGCgCACGUCguGCg -3'
miRNA:   3'- -CGGUga-GGUGGCgc--CG-GUGCAGguCG- -5'
23590 5' -60.4 NC_005261.1 + 103418 0.66 0.709197
Target:  5'- uCCGCgcggGCCGCGGCCACG-CgCGcGCg -3'
miRNA:   3'- cGGUGagg-UGGCGCCGGUGCaG-GU-CG- -5'
23590 5' -60.4 NC_005261.1 + 67955 0.66 0.710167
Target:  5'- cGCuCGCgcggCCGCCGCGGCgAUGgaguucgcuuaccgCAGCg -3'
miRNA:   3'- -CG-GUGa---GGUGGCGCCGgUGCag------------GUCG- -5'
23590 5' -60.4 NC_005261.1 + 106791 0.66 0.715971
Target:  5'- cGCCGuCUgCGCCcgcaccagcgccgaGUGGCC-CG-CCAGCa -3'
miRNA:   3'- -CGGU-GAgGUGG--------------CGCCGGuGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 125679 0.66 0.718865
Target:  5'- uGCCGCcgaaugggUuuGCCG-GGCUugGcCCGGCg -3'
miRNA:   3'- -CGGUG--------AggUGGCgCCGGugCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 121412 0.66 0.718865
Target:  5'- uGCgACggcugCCGCCGCcGCUACGgggCGGCg -3'
miRNA:   3'- -CGgUGa----GGUGGCGcCGGUGCag-GUCG- -5'
23590 5' -60.4 NC_005261.1 + 101900 0.66 0.718865
Target:  5'- cGCgCGCUCCuCCuCGaaaGCCGCGUgcccCCGGCg -3'
miRNA:   3'- -CG-GUGAGGuGGcGC---CGGUGCA----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 83689 0.66 0.718865
Target:  5'- -gCGCgCCGCCGaGGCgGCGccgcagCCAGCg -3'
miRNA:   3'- cgGUGaGGUGGCgCCGgUGCa-----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 56290 0.66 0.718865
Target:  5'- cGCCGCUguucgCCGCCaCGGCCuccCG-CCuGCu -3'
miRNA:   3'- -CGGUGA-----GGUGGcGCCGGu--GCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 16979 0.66 0.718865
Target:  5'- -gCGCcCCACCuGCGGguCCGCGaUCAGCg -3'
miRNA:   3'- cgGUGaGGUGG-CGCC--GGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 121381 0.66 0.718865
Target:  5'- aGgCGCcCCGCgGCGGCgGCG-CCuGCc -3'
miRNA:   3'- -CgGUGaGGUGgCGCCGgUGCaGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 50811 0.66 0.717901
Target:  5'- cGCCaugacggGCUCCG-CGCGGCUugGcgCC-GCg -3'
miRNA:   3'- -CGG-------UGAGGUgGCGCCGGugCa-GGuCG- -5'
23590 5' -60.4 NC_005261.1 + 67786 0.66 0.717901
Target:  5'- gGCCGCccccuccUCCGCCuCGGCgC-CGcCCAGUg -3'
miRNA:   3'- -CGGUG-------AGGUGGcGCCG-GuGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 62338 0.66 0.716937
Target:  5'- cGCC--UCCACCGCGcgcGCCACcacgcgcgccaCCAGCu -3'
miRNA:   3'- -CGGugAGGUGGCGC---CGGUGca---------GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.