miRNA display CGI


Results 21 - 40 of 607 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23590 5' -60.4 NC_005261.1 + 1390 0.8 0.12619
Target:  5'- gGCCACgCCgggcGCCGCGGCCGCGg-CGGCg -3'
miRNA:   3'- -CGGUGaGG----UGGCGCCGGUGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 103590 0.8 0.12619
Target:  5'- cGUCGCUcgCCGCCGUGGCCGCGg-CGGCa -3'
miRNA:   3'- -CGGUGA--GGUGGCGCCGGUGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 108260 0.79 0.129411
Target:  5'- cGCCGCggCCAgCGUcuccacGGCCugGUCCGGCg -3'
miRNA:   3'- -CGGUGa-GGUgGCG------CCGGugCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 104509 0.79 0.129411
Target:  5'- aGCCGCUCCGUgGCGGCCGCGa-CGGCg -3'
miRNA:   3'- -CGGUGAGGUGgCGCCGGUGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 99704 0.79 0.129411
Target:  5'- cGCCAgCUCCGCCacggucgcgcgcGUGGCCGCGUCaGGCg -3'
miRNA:   3'- -CGGU-GAGGUGG------------CGCCGGUGCAGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 47002 0.79 0.132707
Target:  5'- cGCCGCgCCGCCGCGauGCgGCGgUCCAGCc -3'
miRNA:   3'- -CGGUGaGGUGGCGC--CGgUGC-AGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 46681 0.79 0.132707
Target:  5'- cGCgCGCUCCACgGCGGCCGCca-CGGCa -3'
miRNA:   3'- -CG-GUGAGGUGgCGCCGGUGcagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 12293 0.79 0.139533
Target:  5'- uCCGCgUCCGCCGCGGgCACGggcgcguagCCGGCg -3'
miRNA:   3'- cGGUG-AGGUGGCGCCgGUGCa--------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 134025 0.79 0.139533
Target:  5'- cGCCGCcgCCGCgcuCGCGGCCAUGgCCGGCc -3'
miRNA:   3'- -CGGUGa-GGUG---GCGCCGGUGCaGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 122162 0.79 0.143065
Target:  5'- cGCCAgCUCgACCGCGGCCACGa-UGGCg -3'
miRNA:   3'- -CGGU-GAGgUGGCGCCGGUGCagGUCG- -5'
23590 5' -60.4 NC_005261.1 + 84665 0.79 0.146679
Target:  5'- cGCCGC-CCGcgcCCGCGGCCGCGcacacgaagCCGGCg -3'
miRNA:   3'- -CGGUGaGGU---GGCGCCGGUGCa--------GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 108497 0.79 0.146679
Target:  5'- cGCCGCgacgCUAcCCGCGGCCACG-CCGcGCa -3'
miRNA:   3'- -CGGUGa---GGU-GGCGCCGGUGCaGGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 104053 0.78 0.150376
Target:  5'- uGCCGCagCGCCuCGGCCgcgagcGCGUCCAGCu -3'
miRNA:   3'- -CGGUGagGUGGcGCCGG------UGCAGGUCG- -5'
23590 5' -60.4 NC_005261.1 + 102683 0.78 0.150376
Target:  5'- cGCCGCgUCCGCCGCGGCCGuCGcugCC-GCc -3'
miRNA:   3'- -CGGUG-AGGUGGCGCCGGU-GCa--GGuCG- -5'
23590 5' -60.4 NC_005261.1 + 33356 0.78 0.158026
Target:  5'- cGCCACcgCCGCCG-GGCCGCGcCgGGCu -3'
miRNA:   3'- -CGGUGa-GGUGGCgCCGGUGCaGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 42197 0.78 0.16198
Target:  5'- aGCCGCUCCACgGC-GCCGCG-CgGGCg -3'
miRNA:   3'- -CGGUGAGGUGgCGcCGGUGCaGgUCG- -5'
23590 5' -60.4 NC_005261.1 + 29321 0.78 0.166024
Target:  5'- cGCCGCcgCCGCC-CGGCCGCGUgcgcuUCGGCg -3'
miRNA:   3'- -CGGUGa-GGUGGcGCCGGUGCA-----GGUCG- -5'
23590 5' -60.4 NC_005261.1 + 51916 0.78 0.170159
Target:  5'- gGCgCGCagCgGCCGCGGCCugGUCCcGCu -3'
miRNA:   3'- -CG-GUGa-GgUGGCGCCGGugCAGGuCG- -5'
23590 5' -60.4 NC_005261.1 + 98768 0.78 0.170159
Target:  5'- uGCCGCUgCCGCCGcCGGCCGCcggCCGcGCg -3'
miRNA:   3'- -CGGUGA-GGUGGC-GCCGGUGca-GGU-CG- -5'
23590 5' -60.4 NC_005261.1 + 70643 0.78 0.170159
Target:  5'- cGCCGCggcgCUgagguucggcGCCGCGGCCGCGggccgcaccUCCAGCc -3'
miRNA:   3'- -CGGUGa---GG----------UGGCGCCGGUGC---------AGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.