miRNA display CGI


Results 1 - 20 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 79712 0.66 0.488469
Target:  5'- gGCGggCGGCuGUagcaGaCG-CCGCCGGGCg -3'
miRNA:   3'- gCGCa-GCCG-CAg---C-GCgGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 117245 0.66 0.488469
Target:  5'- uCGgGUCGG-GUCuCGUUCGCCGcGcGCCu -3'
miRNA:   3'- -GCgCAGCCgCAGcGCGGGCGGC-C-CGG- -5'
23591 3' -66.5 NC_005261.1 + 3655 0.66 0.488469
Target:  5'- gCGCGUCuGGa---GCGCagGCCGcGGCCg -3'
miRNA:   3'- -GCGCAG-CCgcagCGCGggCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 36978 0.66 0.488469
Target:  5'- aGC-UCGGUG-CGgGCuCCaGCCGGaGCCc -3'
miRNA:   3'- gCGcAGCCGCaGCgCG-GG-CGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 38550 0.66 0.488469
Target:  5'- aGCGcCGGCG-CGCgGCCaugCGgCGGGUUg -3'
miRNA:   3'- gCGCaGCCGCaGCG-CGG---GCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 75479 0.66 0.488469
Target:  5'- gGCGgCGGCG-CGgGCCgcuacgagCGCgGGGCg -3'
miRNA:   3'- gCGCaGCCGCaGCgCGG--------GCGgCCCGg -5'
23591 3' -66.5 NC_005261.1 + 82865 0.66 0.488469
Target:  5'- aGCGaaggCGGCGaCgGCGCUgGCgGuGGCCu -3'
miRNA:   3'- gCGCa---GCCGCaG-CGCGGgCGgC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 134746 0.66 0.488469
Target:  5'- gGCGaCGGCaccCGCGaCCCGCgGcGGCa -3'
miRNA:   3'- gCGCaGCCGca-GCGC-GGGCGgC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 98197 0.66 0.487588
Target:  5'- gGCG-CGGCGggcagCGgGCgCCGCCacggcagcgcggcGGGCa -3'
miRNA:   3'- gCGCaGCCGCa----GCgCG-GGCGG-------------CCCGg -5'
23591 3' -66.5 NC_005261.1 + 59503 0.66 0.487588
Target:  5'- aGCGgCGGCGgucgcacgCGCGCCCuggagcaGCCccGCCg -3'
miRNA:   3'- gCGCaGCCGCa-------GCGCGGG-------CGGccCGG- -5'
23591 3' -66.5 NC_005261.1 + 67930 0.66 0.483191
Target:  5'- uGCGUcauugucccccccgcCGGCccgcUCGCGCggCCGCCGcGGCg -3'
miRNA:   3'- gCGCA---------------GCCGc---AGCGCG--GGCGGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 86905 0.66 0.479687
Target:  5'- gCGCG-CGGCGcggaccCGCGUccaCCGCCGccGCCg -3'
miRNA:   3'- -GCGCaGCCGCa-----GCGCG---GGCGGCc-CGG- -5'
23591 3' -66.5 NC_005261.1 + 104321 0.66 0.479687
Target:  5'- gCGCG-CGGaCGcgCGCGUCCagcgGCC-GGCCg -3'
miRNA:   3'- -GCGCaGCC-GCa-GCGCGGG----CGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 110440 0.66 0.479687
Target:  5'- aCGCGUUcccgcaccgGGCGUUuggGUGCCUgGgCGGGCUg -3'
miRNA:   3'- -GCGCAG---------CCGCAG---CGCGGG-CgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 120400 0.66 0.479687
Target:  5'- aGCagagCGGCGUCuGCGCUgagcgGCCuGGGCUg -3'
miRNA:   3'- gCGca--GCCGCAG-CGCGGg----CGG-CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 133653 0.66 0.479687
Target:  5'- uGCG-CGaGCGcugCGUGCUCGCCuccGGcGCCa -3'
miRNA:   3'- gCGCaGC-CGCa--GCGCGGGCGG---CC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 13856 0.66 0.479687
Target:  5'- uCGuCGcCGGCGUCGcCGgCgGCCcGGUCg -3'
miRNA:   3'- -GC-GCaGCCGCAGC-GCgGgCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 33605 0.66 0.479687
Target:  5'- gGCGcCGGCG-CGgG-CgGCgGGGCCc -3'
miRNA:   3'- gCGCaGCCGCaGCgCgGgCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 38605 0.66 0.479687
Target:  5'- cCGCGgcuGGCGg-GUGUUgGCCGcGGCCg -3'
miRNA:   3'- -GCGCag-CCGCagCGCGGgCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 61953 0.66 0.479687
Target:  5'- gCGCGcCGaccGCGUC-C-CCCaGCCGGGUCg -3'
miRNA:   3'- -GCGCaGC---CGCAGcGcGGG-CGGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.