Results 81 - 100 of 613 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 76364 | 0.66 | 0.462361 |
Target: 5'- cCGCG-CGcGCGUgcaccCGCGCugCCGCCGccaacauaaaaaGGCCg -3' miRNA: 3'- -GCGCaGC-CGCA-----GCGCG--GGCGGC------------CCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 73150 | 0.66 | 0.462361 |
Target: 5'- uCGCGccgccaggCGGCGUUGuUGCUCGgCCGGGg- -3' miRNA: 3'- -GCGCa-------GCCGCAGC-GCGGGC-GGCCCgg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 57539 | 0.66 | 0.462361 |
Target: 5'- gGCG-CGGCGcacgggcacacgUcgcaCGCGCCCGgcuCCGGcGCCg -3' miRNA: 3'- gCGCaGCCGC------------A----GCGCGGGC---GGCC-CGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 39965 | 0.66 | 0.462361 |
Target: 5'- uCGCGcaggcUCaGCGgguugCGCGCgCCGCCGGcGUg -3' miRNA: 3'- -GCGC-----AGcCGCa----GCGCG-GGCGGCC-CGg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 102429 | 0.66 | 0.462361 |
Target: 5'- uGCG-CGGCcgccuccUCgGCGCgCCGCCcGGCCu -3' miRNA: 3'- gCGCaGCCGc------AG-CGCG-GGCGGcCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 55409 | 0.66 | 0.462361 |
Target: 5'- uGCaUCuacGCG-CGCGCCgGCUGGcGCCa -3' miRNA: 3'- gCGcAGc--CGCaGCGCGGgCGGCC-CGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 123728 | 0.66 | 0.462361 |
Target: 5'- aGCGUCGucGCgGUC-CGCaCCGCCaguaGGCCu -3' miRNA: 3'- gCGCAGC--CG-CAGcGCG-GGCGGc---CCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 99854 | 0.66 | 0.468388 |
Target: 5'- aGCGgcacCGGcCGcCGCGCgCCGCCgccgcucggcgcgaGGGCg -3' miRNA: 3'- gCGCa---GCC-GCaGCGCG-GGCGG--------------CCCGg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 17824 | 0.66 | 0.470117 |
Target: 5'- gGCGUUGcacuccaGCGagGCGuUCCGCaGGGCCu -3' miRNA: 3'- gCGCAGC-------CGCagCGC-GGGCGgCCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 57790 | 0.66 | 0.470983 |
Target: 5'- gGCGUCGcGCGgCGgGCgCGCgaaGGCCg -3' miRNA: 3'- gCGCAGC-CGCaGCgCGgGCGgc-CCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 67800 | 0.66 | 0.474455 |
Target: 5'- cCGCcUCGGCGccgcccaguggcaacUCggGCGCgCGCaggaGGGCCg -3' miRNA: 3'- -GCGcAGCCGC---------------AG--CGCGgGCGg---CCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 109342 | 0.66 | 0.474455 |
Target: 5'- gGgGUCGGCGgcCGCGUcgccguccagCCGCUcgagcgcggcccagaGGGCCc -3' miRNA: 3'- gCgCAGCCGCa-GCGCG----------GGCGG---------------CCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 28188 | 0.66 | 0.470983 |
Target: 5'- gCGCGccgaagcCGGCGgccUCGcCGCCgcUGCCGcGGCCc -3' miRNA: 3'- -GCGCa------GCCGC---AGC-GCGG--GCGGC-CCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 15226 | 0.66 | 0.470983 |
Target: 5'- uCGCcgaGcCGGCGUUGaggcccCGCUCGCaguGGGCCg -3' miRNA: 3'- -GCG---CaGCCGCAGC------GCGGGCGg--CCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 121632 | 0.66 | 0.470983 |
Target: 5'- cCGC-UCGGCGgcCGcCGCCgGCgagcgCGGGCUg -3' miRNA: 3'- -GCGcAGCCGCa-GC-GCGGgCG-----GCCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 78840 | 0.66 | 0.470983 |
Target: 5'- uGCGguacgcCGGCG--GCGCCCGCC--GCCg -3' miRNA: 3'- gCGCa-----GCCGCagCGCGGGCGGccCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 71489 | 0.66 | 0.470983 |
Target: 5'- uGCG-CGGCGgccaggugCGCGCgaaagUCGgCGGGCUc -3' miRNA: 3'- gCGCaGCCGCa-------GCGCG-----GGCgGCCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 104440 | 0.66 | 0.470983 |
Target: 5'- aGCGggcCcGCGUCGC-CgCCGCCGGcggcGCCg -3' miRNA: 3'- gCGCa--GcCGCAGCGcG-GGCGGCC----CGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 62839 | 0.66 | 0.470983 |
Target: 5'- gGCGggggacUGGCGcgcccCGCGCCaCGCgGcGGCCu -3' miRNA: 3'- gCGCa-----GCCGCa----GCGCGG-GCGgC-CCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 45662 | 0.66 | 0.462361 |
Target: 5'- aGCG--GGCGUgaucaaCGCGCgCC-CCGGGCUg -3' miRNA: 3'- gCGCagCCGCA------GCGCG-GGcGGCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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