miRNA display CGI


Results 101 - 120 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 62839 0.66 0.470983
Target:  5'- gGCGggggacUGGCGcgcccCGCGCCaCGCgGcGGCCu -3'
miRNA:   3'- gCGCa-----GCCGCa----GCGCGG-GCGgC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 57790 0.66 0.470983
Target:  5'- gGCGUCGcGCGgCGgGCgCGCgaaGGCCg -3'
miRNA:   3'- gCGCAGC-CGCaGCgCGgGCGgc-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 134200 0.67 0.420551
Target:  5'- gCGCGgcUCGGCG-CGCgGgUCGCgGcGGCCg -3'
miRNA:   3'- -GCGC--AGCCGCaGCG-CgGGCGgC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 92603 0.67 0.420551
Target:  5'- cCGCucgCGGCG-CGUGCCgGggccCCGGGCg -3'
miRNA:   3'- -GCGca-GCCGCaGCGCGGgC----GGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 46945 0.67 0.420551
Target:  5'- aCGCGgcccgCGGgccaguccgcgcCGUCGCcgcugccgccGCCCGCCGGcagcgcgcGCCg -3'
miRNA:   3'- -GCGCa----GCC------------GCAGCG----------CGGGCGGCC--------CGG- -5'
23591 3' -66.5 NC_005261.1 + 30217 0.67 0.420551
Target:  5'- cCGCGcUGGCGgCGCGaaccguggcCCCGCUGGcGCg -3'
miRNA:   3'- -GCGCaGCCGCaGCGC---------GGGCGGCC-CGg -5'
23591 3' -66.5 NC_005261.1 + 13419 0.67 0.420551
Target:  5'- aCGCGaaGGCGcacCGCGCgUCGaCCGGGUg -3'
miRNA:   3'- -GCGCagCCGCa--GCGCG-GGC-GGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 98324 0.67 0.420551
Target:  5'- cCGCcagCGGCGgCGCGCCCcgugucgacGCgGGGgCg -3'
miRNA:   3'- -GCGca-GCCGCaGCGCGGG---------CGgCCCgG- -5'
23591 3' -66.5 NC_005261.1 + 80668 0.67 0.420551
Target:  5'- uCGCGgugCGcGcCGUCGCggaGCCCGUagaaGGGCg -3'
miRNA:   3'- -GCGCa--GC-C-GCAGCG---CGGGCGg---CCCGg -5'
23591 3' -66.5 NC_005261.1 + 40218 0.67 0.420551
Target:  5'- aCGCGaUGaGCGUCGuCGUCUcugGCCcggGGGCCg -3'
miRNA:   3'- -GCGCaGC-CGCAGC-GCGGG---CGG---CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 71959 0.67 0.422179
Target:  5'- gGCGUCGGCGcggggcgcggagCGCGCggcaggugcgcagcgUCGCCccuGGCCu -3'
miRNA:   3'- gCGCAGCCGCa-----------GCGCG---------------GGCGGc--CCGG- -5'
23591 3' -66.5 NC_005261.1 + 42654 0.67 0.425448
Target:  5'- cCGCG-CGGaaccagccaaGCGgCgGCCGGGCCg -3'
miRNA:   3'- -GCGCaGCCgcag------CGCgGgCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 115474 0.67 0.428731
Target:  5'- gGUGUCGGuCG-CGgGCUCGgCCGcGGCg -3'
miRNA:   3'- gCGCAGCC-GCaGCgCGGGC-GGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 111544 0.67 0.428731
Target:  5'- aCGCGUUcauGCGgacCGCCUGCCcGGCCg -3'
miRNA:   3'- -GCGCAGc--CGCagcGCGGGCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 49262 0.67 0.428731
Target:  5'- gGCGUCGGCG-CGCacGUCCGCgaggaaGGcGCa -3'
miRNA:   3'- gCGCAGCCGCaGCG--CGGGCGg-----CC-CGg -5'
23591 3' -66.5 NC_005261.1 + 47619 0.67 0.428731
Target:  5'- uGCGggGGCGgcCGCGgCCGCCGcGCg -3'
miRNA:   3'- gCGCagCCGCa-GCGCgGGCGGCcCGg -5'
23591 3' -66.5 NC_005261.1 + 42499 0.67 0.428731
Target:  5'- gGCGaCGcGCGUCGCGCCCGUgaucacgcaguCGaGCg -3'
miRNA:   3'- gCGCaGC-CGCAGCGCGGGCG-----------GCcCGg -5'
23591 3' -66.5 NC_005261.1 + 107348 0.67 0.427909
Target:  5'- cCGCGUUGcggaccuGCGUCGuCGUgggCGCCGGGgCg -3'
miRNA:   3'- -GCGCAGC-------CGCAGC-GCGg--GCGGCCCgG- -5'
23591 3' -66.5 NC_005261.1 + 15290 0.67 0.427909
Target:  5'- gCGCG-CGGU--CGCgGCCUccgggucgucggaGCCGGGCCc -3'
miRNA:   3'- -GCGCaGCCGcaGCG-CGGG-------------CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 23831 0.67 0.420551
Target:  5'- gGCGggcCGGCuagggUGgGCUCGCCGGGgCa -3'
miRNA:   3'- gCGCa--GCCGca---GCgCGGGCGGCCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.