Results 41 - 60 of 613 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23591 | 3' | -66.5 | NC_005261.1 | + | 24041 | 0.77 | 0.086213 |
Target: 5'- uCGgGUgGGCGUCcuuggguggGCGCCCGCCcgaguGGGCCc -3' miRNA: 3'- -GCgCAgCCGCAG---------CGCGGGCGG-----CCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 60382 | 0.76 | 0.107161 |
Target: 5'- -uCGUUGGCGaggUGCGCCuccauggCGCCGGGCCg -3' miRNA: 3'- gcGCAGCCGCa--GCGCGG-------GCGGCCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 48751 | 0.76 | 0.09745 |
Target: 5'- uGCG-CGuaGUCGCGCCCcCCGGGCg -3' miRNA: 3'- gCGCaGCcgCAGCGCGGGcGGCCCGg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 14224 | 0.76 | 0.104843 |
Target: 5'- aCGCGcgCGGUGaagacCGCGCCgGCCGgGGCCu -3' miRNA: 3'- -GCGCa-GCCGCa----GCGCGGgCGGC-CCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 97157 | 0.76 | 0.09745 |
Target: 5'- gGCGcCGGCccggccggcuggGUCgcggGCGCCgGCCGGGCCg -3' miRNA: 3'- gCGCaGCCG------------CAG----CGCGGgCGGCCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 108478 | 0.76 | 0.099614 |
Target: 5'- cCGCGUCGGCGcgcacgCGCGCCgCGacgcuacCCGcGGCCa -3' miRNA: 3'- -GCGCAGCCGCa-----GCGCGG-GC-------GGC-CCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 74955 | 0.76 | 0.109528 |
Target: 5'- gCGCGcUCGGCGcgcucgaggccgCGCGCCCgcGCCGGGUg -3' miRNA: 3'- -GCGC-AGCCGCa-----------GCGCGGG--CGGCCCGg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 23474 | 0.76 | 0.104843 |
Target: 5'- cCGCGgCGGCGagugcgCGgGCCCGCCuGGGCa -3' miRNA: 3'- -GCGCaGCCGCa-----GCgCGGGCGG-CCCGg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 97387 | 0.76 | 0.099858 |
Target: 5'- cCGCG-CGGCuuUCGCGCCUGCCgcGGGCUu -3' miRNA: 3'- -GCGCaGCCGc-AGCGCGGGCGG--CCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 72944 | 0.76 | 0.099614 |
Target: 5'- aGCGcCGGCGccggcaccggcUCGCGCCCGCCgccgcggGGGUCc -3' miRNA: 3'- gCGCaGCCGC-----------AGCGCGGGCGG-------CCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 4478 | 0.76 | 0.107422 |
Target: 5'- uCGCG-CGGCGcCGCggcguaGCCUGCgCGGGCCc -3' miRNA: 3'- -GCGCaGCCGCaGCG------CGGGCG-GCCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 96612 | 0.76 | 0.104843 |
Target: 5'- -aCGUCGcGCGUgGCGCgcagCCGCCGGGCg -3' miRNA: 3'- gcGCAGC-CGCAgCGCG----GGCGGCCCGg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 76711 | 0.75 | 0.115522 |
Target: 5'- -uCGUCGGCGUCGUcaacuGCCCGCagcuGGCCg -3' miRNA: 3'- gcGCAGCCGCAGCG-----CGGGCGgc--CCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 105977 | 0.75 | 0.130298 |
Target: 5'- aGCG-CGGCGUCGacgcCGCCCGCgaaGGCCa -3' miRNA: 3'- gCGCaGCCGCAGC----GCGGGCGgc-CCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 11869 | 0.75 | 0.116644 |
Target: 5'- aGCGUCagcugcggGGCGagcccgcccgcacgCGCGCCCGCCgcGGGCCc -3' miRNA: 3'- gCGCAG--------CCGCa-------------GCGCGGGCGG--CCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 115844 | 0.75 | 0.130298 |
Target: 5'- gCGCGUUGGCccgCGCGgccCCCGCCGaGGCg -3' miRNA: 3'- -GCGCAGCCGca-GCGC---GGGCGGC-CCGg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 53718 | 0.75 | 0.115522 |
Target: 5'- cCGCGgccagCuGCGgCGCGCCCGCaCGGGCg -3' miRNA: 3'- -GCGCa----GcCGCaGCGCGGGCG-GCCCGg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 103451 | 0.75 | 0.133456 |
Target: 5'- uCGCgGUCGGcCGcCGCGCCCGUCgccaGGGCg -3' miRNA: 3'- -GCG-CAGCC-GCaGCGCGGGCGG----CCCGg -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 99803 | 0.75 | 0.133456 |
Target: 5'- gCGCGgauGGCGaacagCGCGCcguCCGCCGGGUCg -3' miRNA: 3'- -GCGCag-CCGCa----GCGCG---GGCGGCCCGG- -5' |
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23591 | 3' | -66.5 | NC_005261.1 | + | 4576 | 0.75 | 0.133456 |
Target: 5'- gGCGggucCGGCGggGCGCCCcCCGGcGCCa -3' miRNA: 3'- gCGCa---GCCGCagCGCGGGcGGCC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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