miRNA display CGI


Results 61 - 80 of 613 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 101830 0.75 0.117209
Target:  5'- gCGCG-CGGCugaucuccgccgCGCGCCCGCCGGccGCCu -3'
miRNA:   3'- -GCGCaGCCGca----------GCGCGGGCGGCC--CGG- -5'
23591 3' -66.5 NC_005261.1 + 88565 0.75 0.124189
Target:  5'- aGCGcCGGCGaCGCGUcccgcuucgCCGCCGaGGCCc -3'
miRNA:   3'- gCGCaGCCGCaGCGCG---------GGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 64813 0.75 0.124189
Target:  5'- aCGCG-CGcGCG-CGCGCCgcgCGCCGGGUCc -3'
miRNA:   3'- -GCGCaGC-CGCaGCGCGG---GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 105977 0.75 0.130298
Target:  5'- aGCG-CGGCGUCGacgcCGCCCGCgaaGGCCa -3'
miRNA:   3'- gCGCaGCCGCAGC----GCGGGCGgc-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 53718 0.75 0.115522
Target:  5'- cCGCGgccagCuGCGgCGCGCCCGCaCGGGCg -3'
miRNA:   3'- -GCGCa----GcCGCaGCGCGGGCG-GCCCGg -5'
23591 3' -66.5 NC_005261.1 + 43270 0.75 0.115522
Target:  5'- uGCGUUcggGGCGUCGCGgCCGCCuuucccgcgggGGGCg -3'
miRNA:   3'- gCGCAG---CCGCAGCGCgGGCGG-----------CCCGg -5'
23591 3' -66.5 NC_005261.1 + 106115 0.75 0.124189
Target:  5'- gGCGUcgcCGGCG-CGCGCgCGCCGGcaacGCCg -3'
miRNA:   3'- gCGCA---GCCGCaGCGCGgGCGGCC----CGG- -5'
23591 3' -66.5 NC_005261.1 + 115844 0.75 0.130298
Target:  5'- gCGCGUUGGCccgCGCGgccCCCGCCGaGGCg -3'
miRNA:   3'- -GCGCAGCCGca-GCGC---GGGCGGC-CCGg -5'
23591 3' -66.5 NC_005261.1 + 99803 0.75 0.133456
Target:  5'- gCGCGgauGGCGaacagCGCGCcguCCGCCGGGUCg -3'
miRNA:   3'- -GCGCag-CCGCa----GCGCG---GGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 76711 0.75 0.115522
Target:  5'- -uCGUCGGCGUCGUcaacuGCCCGCagcuGGCCg -3'
miRNA:   3'- gcGCAGCCGCAGCG-----CGGGCGgc--CCGG- -5'
23591 3' -66.5 NC_005261.1 + 70645 0.75 0.115522
Target:  5'- cCGCGgcgcugagguUCGGCGcCGCGgCCG-CGGGCCg -3'
miRNA:   3'- -GCGC----------AGCCGCaGCGCgGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 4576 0.75 0.133456
Target:  5'- gGCGggucCGGCGggGCGCCCcCCGGcGCCa -3'
miRNA:   3'- gCGCa---GCCGCagCGCGGGcGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 137802 0.74 0.15356
Target:  5'- cCGCGcCGGCGcCGCcccugguGCUCGCgGGGCUg -3'
miRNA:   3'- -GCGCaGCCGCaGCG-------CGGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 73720 0.74 0.153923
Target:  5'- cCGCgGUCGGCGUgCGCGCuuGCgcgcgggggucCGGuGCCa -3'
miRNA:   3'- -GCG-CAGCCGCA-GCGCGggCG-----------GCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 118851 0.74 0.150325
Target:  5'- gCGCGgagGGCGgCGCGCCCGCgGcccuGGCCu -3'
miRNA:   3'- -GCGCag-CCGCaGCGCGGGCGgC----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 3438 0.74 0.150325
Target:  5'- aGCGUCcaGGCGggCGCGCgggCCGCCGcGCCg -3'
miRNA:   3'- gCGCAG--CCGCa-GCGCG---GGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 13047 0.74 0.150325
Target:  5'- gCGCGgggCcGCG-CGCGCCCcuGCCGGGCg -3'
miRNA:   3'- -GCGCa--GcCGCaGCGCGGG--CGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 82048 0.74 0.153923
Target:  5'- uGCGUCaGCG-CGgGCCacguCGCCGGGUCg -3'
miRNA:   3'- gCGCAGcCGCaGCgCGG----GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 88467 0.74 0.146803
Target:  5'- gCGUGUgGGCGggcCGUGCCgCGCCGGaGCg -3'
miRNA:   3'- -GCGCAgCCGCa--GCGCGG-GCGGCC-CGg -5'
23591 3' -66.5 NC_005261.1 + 62384 0.74 0.148202
Target:  5'- uGCGgcagCGGCaccgucGUggggaagagcagcucCGCGCCCGCCGaGGCCa -3'
miRNA:   3'- gCGCa---GCCG------CA---------------GCGCGGGCGGC-CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.