miRNA display CGI


Results 81 - 100 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 82048 0.74 0.153923
Target:  5'- uGCGUCaGCG-CGgGCCacguCGCCGGGUCg -3'
miRNA:   3'- gCGCAGcCGCaGCgCGG----GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 48671 0.74 0.146803
Target:  5'- gCGCGgcaaCGGCGacuaCGgGCCCG-CGGGCCa -3'
miRNA:   3'- -GCGCa---GCCGCa---GCgCGGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 126519 0.74 0.143356
Target:  5'- uGCcUgGGCGccCGCGCCCGCCGcGCCu -3'
miRNA:   3'- gCGcAgCCGCa-GCGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 71400 0.74 0.146455
Target:  5'- aCGCGUgguaggCGGCGUCcggcgcgGgGCCCGgcCCGGGCCc -3'
miRNA:   3'- -GCGCA------GCCGCAG-------CgCGGGC--GGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 119 0.74 0.15356
Target:  5'- cCGCGcCGGCGcCGCcccugguGCUCGCgGGGCUg -3'
miRNA:   3'- -GCGCaGCCGCaGCG-------CGGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 102583 0.74 0.136684
Target:  5'- cCGCGUCGGCGgccucgccCGCGCCuuccgcguccuCGCCGccagcGGCCu -3'
miRNA:   3'- -GCGCAGCCGCa-------GCGCGG-----------GCGGC-----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 117483 0.74 0.136684
Target:  5'- aCGCGcugCuGCGcuucuaccUUGCGCCCGCCGGcGCCg -3'
miRNA:   3'- -GCGCa--GcCGC--------AGCGCGGGCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 3438 0.74 0.150325
Target:  5'- aGCGUCcaGGCGggCGCGCgggCCGCCGcGCCg -3'
miRNA:   3'- gCGCAG--CCGCa-GCGCG---GGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 120442 0.74 0.136358
Target:  5'- uGCG-CGGCGU-GCGCCUGCucuccgcgauagaCGGGCCc -3'
miRNA:   3'- gCGCaGCCGCAgCGCGGGCG-------------GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 62384 0.74 0.148202
Target:  5'- uGCGgcagCGGCaccgucGUggggaagagcagcucCGCGCCCGCCGaGGCCa -3'
miRNA:   3'- gCGCa---GCCG------CA---------------GCGCGGGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 118851 0.74 0.150325
Target:  5'- gCGCGgagGGCGgCGCGCCCGCgGcccuGGCCu -3'
miRNA:   3'- -GCGCag-CCGCaGCGCGGGCGgC----CCGG- -5'
23591 3' -66.5 NC_005261.1 + 5130 0.74 0.136684
Target:  5'- gGCGgcccgcCGGCGcUCGCgcgccucgGCCCGgCGGGCCg -3'
miRNA:   3'- gCGCa-----GCCGC-AGCG--------CGGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 73720 0.74 0.153923
Target:  5'- cCGCgGUCGGCGUgCGCGCuuGCgcgcgggggucCGGuGCCa -3'
miRNA:   3'- -GCG-CAGCCGCA-GCGCGggCG-----------GCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 137802 0.74 0.15356
Target:  5'- cCGCGcCGGCGcCGCcccugguGCUCGCgGGGCUg -3'
miRNA:   3'- -GCGCaGCCGCaGCG-------CGGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 51773 0.74 0.136684
Target:  5'- gGCGcuggcCGGCGUCGCccuGCUgGCCGuGGCCa -3'
miRNA:   3'- gCGCa----GCCGCAGCG---CGGgCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 6335 0.73 0.164805
Target:  5'- cCGCGUacccccugcccacCGGCcUCGCGCCgGuCCGGcGCCg -3'
miRNA:   3'- -GCGCA-------------GCCGcAGCGCGGgC-GGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 64314 0.73 0.165192
Target:  5'- uCGCGUcgCGGcCGUagcCGUGCCCGCgucaGGGCCc -3'
miRNA:   3'- -GCGCA--GCC-GCA---GCGCGGGCGg---CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 33750 0.73 0.165192
Target:  5'- gGCGcCGGgGcCGgGCCCGCUcgcgGGGCCc -3'
miRNA:   3'- gCGCaGCCgCaGCgCGGGCGG----CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 32502 0.73 0.165192
Target:  5'- gGCGgcaUCGGCGgggggucCGCGCCgCGCCcGGCCc -3'
miRNA:   3'- gCGC---AGCCGCa------GCGCGG-GCGGcCCGG- -5'
23591 3' -66.5 NC_005261.1 + 1168 0.73 0.165192
Target:  5'- gCGCGcCGGCc-CGCGCCgCgGCCGgGGCCg -3'
miRNA:   3'- -GCGCaGCCGcaGCGCGG-G-CGGC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.