miRNA display CGI


Results 1 - 20 of 613 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 99235 1.1 0.000306
Target:  5'- gCGCGUCGGCGUCGCGCCCGCCGGGCCg -3'
miRNA:   3'- -GCGCAGCCGCAGCGCGGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 94470 0.86 0.018601
Target:  5'- cCGCGUCGGCGUCGU-CCCG-CGGGCCg -3'
miRNA:   3'- -GCGCAGCCGCAGCGcGGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 59310 0.83 0.031233
Target:  5'- cCGCGUCaaaccacucggccaGCGUgCGCGCCCGCCGGGUCg -3'
miRNA:   3'- -GCGCAGc-------------CGCA-GCGCGGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 68736 0.82 0.037847
Target:  5'- gGCGcCGGCGggaagaaGCGCCCGCCGGGgCg -3'
miRNA:   3'- gCGCaGCCGCag-----CGCGGGCGGCCCgG- -5'
23591 3' -66.5 NC_005261.1 + 4394 0.81 0.048673
Target:  5'- aCGCGgccgggCGGCGgcgGCGCgCUGCCGGGCCa -3'
miRNA:   3'- -GCGCa-----GCCGCag-CGCG-GGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 2390 0.8 0.051176
Target:  5'- gCGCGcuggCGGCGagCGCGCCCG-CGGGCCc -3'
miRNA:   3'- -GCGCa---GCCGCa-GCGCGGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 82362 0.8 0.051176
Target:  5'- gGCGUCGGCGcgcgCGCGCgCCGCCaGcGCCg -3'
miRNA:   3'- gCGCAGCCGCa---GCGCG-GGCGGcC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 97078 0.8 0.056562
Target:  5'- cCGCGUCGGag--GCGCCgGCUGGGCCg -3'
miRNA:   3'- -GCGCAGCCgcagCGCGGgCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 118728 0.8 0.056562
Target:  5'- gGCGggcaCGGCGUCGCGCUCGCCGaGCa -3'
miRNA:   3'- gCGCa---GCCGCAGCGCGGGCGGCcCGg -5'
23591 3' -66.5 NC_005261.1 + 30153 0.8 0.059457
Target:  5'- gCGCGccuuagCGGCGcCGCGCCCGCCGcGCUg -3'
miRNA:   3'- -GCGCa-----GCCGCaGCGCGGGCGGCcCGG- -5'
23591 3' -66.5 NC_005261.1 + 60843 0.8 0.059457
Target:  5'- gGCGgCGGCGagGuCGCgCGCCGGGCCg -3'
miRNA:   3'- gCGCaGCCGCagC-GCGgGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 131768 0.8 0.059457
Target:  5'- gGCG-CGGCGg-GCGCgCCGCUGGGCCc -3'
miRNA:   3'- gCGCaGCCGCagCGCG-GGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 2605 0.79 0.060958
Target:  5'- cCGcCGUCGGCGgCGgGgCCGCCGGGCg -3'
miRNA:   3'- -GC-GCAGCCGCaGCgCgGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 70590 0.79 0.060958
Target:  5'- aGCGcagCGGCGU-GCGCCCGCCcgaagaGGGCCc -3'
miRNA:   3'- gCGCa--GCCGCAgCGCGGGCGG------CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 81504 0.79 0.062495
Target:  5'- aGCG-CGGCGcgCGCGCcgCCGCCGGcGCCa -3'
miRNA:   3'- gCGCaGCCGCa-GCGCG--GGCGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 106554 0.78 0.070762
Target:  5'- cCGCGUccgggcCGGCG-CGCGCCgGCCccgGGGCCg -3'
miRNA:   3'- -GCGCA------GCCGCaGCGCGGgCGG---CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 5248 0.78 0.070762
Target:  5'- aGCGUggcCGGC-UCGUGCCCGCCGGGagaCg -3'
miRNA:   3'- gCGCA---GCCGcAGCGCGGGCGGCCCg--G- -5'
23591 3' -66.5 NC_005261.1 + 10540 0.78 0.072537
Target:  5'- uCGCuGUCGccccCGgCGCGCCUGCCGGGCCc -3'
miRNA:   3'- -GCG-CAGCc---GCaGCGCGGGCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 30263 0.78 0.072537
Target:  5'- gCGCGgcgCGGCGgcccgCGCGCCCGCCuggacgcuGGCCc -3'
miRNA:   3'- -GCGCa--GCCGCa----GCGCGGGCGGc-------CCGG- -5'
23591 3' -66.5 NC_005261.1 + 134233 0.78 0.074355
Target:  5'- aGCGUCGGCGUgGCGCaCgCGCCcugcgcGGCCg -3'
miRNA:   3'- gCGCAGCCGCAgCGCG-G-GCGGc-----CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.