miRNA display CGI


Results 21 - 40 of 613 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 18524 0.78 0.076216
Target:  5'- cCGCGUcaaugacggCGGCGUccCGCgGCCCGCUGGGCa -3'
miRNA:   3'- -GCGCA---------GCCGCA--GCG-CGGGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 31861 0.78 0.076216
Target:  5'- gCGCGUcuucgggccCGGCGccuUCGCGCgCGCCGaGGCCg -3'
miRNA:   3'- -GCGCA---------GCCGC---AGCGCGgGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 91196 0.78 0.078123
Target:  5'- gCGCGcuUCGGCGcCGUGCUgGCCGaGGCCc -3'
miRNA:   3'- -GCGC--AGCCGCaGCGCGGgCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 77 0.78 0.078123
Target:  5'- gCGCGggGGCGgggugcggggCGCGCCC-CCGGGCCc -3'
miRNA:   3'- -GCGCagCCGCa---------GCGCGGGcGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 137760 0.78 0.078123
Target:  5'- gCGCGggGGCGgggugcggggCGCGCCC-CCGGGCCc -3'
miRNA:   3'- -GCGCagCCGCa---------GCGCGGGcGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 1834 0.78 0.080074
Target:  5'- aGCGgccUCGGCG-CGCGCgaaggCGCCGGGCCc -3'
miRNA:   3'- gCGC---AGCCGCaGCGCGg----GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 106235 0.78 0.082073
Target:  5'- gGCG-CGGcCGcCGCGCCCuaCCGGGCCg -3'
miRNA:   3'- gCGCaGCC-GCaGCGCGGGc-GGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 83744 0.78 0.082073
Target:  5'- gGCGUCgagguGGCGgCGCGCCacgGCCGGGUCg -3'
miRNA:   3'- gCGCAG-----CCGCaGCGCGGg--CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 73455 0.77 0.084118
Target:  5'- cCGCGUCcGCGUccgCGCGCCCcccCUGGGCCg -3'
miRNA:   3'- -GCGCAGcCGCA---GCGCGGGc--GGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 88820 0.77 0.08495
Target:  5'- gGCGgggCGGCGgcgCGCGCCgGCCcggcgucggcuaccuGGGCCg -3'
miRNA:   3'- gCGCa--GCCGCa--GCGCGGgCGG---------------CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 106635 0.77 0.086213
Target:  5'- gCGCGacgagcUCGGCGacgUCGCGCUCGCCGGcGCg -3'
miRNA:   3'- -GCGC------AGCCGC---AGCGCGGGCGGCC-CGg -5'
23591 3' -66.5 NC_005261.1 + 100695 0.77 0.086213
Target:  5'- cCGCGgccgCGGCG-CGCGCCgcccgaGCCGcGGCCg -3'
miRNA:   3'- -GCGCa---GCCGCaGCGCGGg-----CGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 21868 0.77 0.086213
Target:  5'- uCGCGcUC-GCGaacgCGCGCCCGCgGGGCCc -3'
miRNA:   3'- -GCGC-AGcCGCa---GCGCGGGCGgCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 24041 0.77 0.086213
Target:  5'- uCGgGUgGGCGUCcuuggguggGCGCCCGCCcgaguGGGCCc -3'
miRNA:   3'- -GCgCAgCCGCAG---------CGCGGGCGG-----CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 63003 0.77 0.086213
Target:  5'- gGCccUCGGCGgcCGCGCCCGCgCGGGCg -3'
miRNA:   3'- gCGc-AGCCGCa-GCGCGGGCG-GCCCGg -5'
23591 3' -66.5 NC_005261.1 + 103873 0.77 0.088357
Target:  5'- gGCGgggCGGCGccgccgggcggCGCGCCaaGCCGGGCCa -3'
miRNA:   3'- gCGCa--GCCGCa----------GCGCGGg-CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 107126 0.77 0.090552
Target:  5'- cCGCGcCGGCGaCgGCGCCCacgGCCGcGGCCa -3'
miRNA:   3'- -GCGCaGCCGCaG-CGCGGG---CGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 77046 0.77 0.090552
Target:  5'- gCGCGgcccUCGGCGacCGCGCCUgGCCGGuGCCg -3'
miRNA:   3'- -GCGC----AGCCGCa-GCGCGGG-CGGCC-CGG- -5'
23591 3' -66.5 NC_005261.1 + 63434 0.77 0.092798
Target:  5'- cCGuCGcCGGCGUaggcCGCGCCCGCCGaGcGCCc -3'
miRNA:   3'- -GC-GCaGCCGCA----GCGCGGGCGGC-C-CGG- -5'
23591 3' -66.5 NC_005261.1 + 3341 0.77 0.092798
Target:  5'- cCGCGccgCGGCGcccggCGCGCCgGCCuucaGGGCCg -3'
miRNA:   3'- -GCGCa--GCCGCa----GCGCGGgCGG----CCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.