miRNA display CGI


Results 41 - 60 of 613 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23591 3' -66.5 NC_005261.1 + 102670 0.77 0.095097
Target:  5'- cCGCGgCGcccaGCGcCGCGUCCGCCGcGGCCg -3'
miRNA:   3'- -GCGCaGC----CGCaGCGCGGGCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 48751 0.76 0.09745
Target:  5'- uGCG-CGuaGUCGCGCCCcCCGGGCg -3'
miRNA:   3'- gCGCaGCcgCAGCGCGGGcGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 97157 0.76 0.09745
Target:  5'- gGCGcCGGCccggccggcuggGUCgcggGCGCCgGCCGGGCCg -3'
miRNA:   3'- gCGCaGCCG------------CAG----CGCGGgCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 108478 0.76 0.099614
Target:  5'- cCGCGUCGGCGcgcacgCGCGCCgCGacgcuacCCGcGGCCa -3'
miRNA:   3'- -GCGCAGCCGCa-----GCGCGG-GC-------GGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 72944 0.76 0.099614
Target:  5'- aGCGcCGGCGccggcaccggcUCGCGCCCGCCgccgcggGGGUCc -3'
miRNA:   3'- gCGCaGCCGC-----------AGCGCGGGCGG-------CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 97387 0.76 0.099858
Target:  5'- cCGCG-CGGCuuUCGCGCCUGCCgcGGGCUu -3'
miRNA:   3'- -GCGCaGCCGc-AGCGCGGGCGG--CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 96612 0.76 0.104843
Target:  5'- -aCGUCGcGCGUgGCGCgcagCCGCCGGGCg -3'
miRNA:   3'- gcGCAGC-CGCAgCGCG----GGCGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 23474 0.76 0.104843
Target:  5'- cCGCGgCGGCGagugcgCGgGCCCGCCuGGGCa -3'
miRNA:   3'- -GCGCaGCCGCa-----GCgCGGGCGG-CCCGg -5'
23591 3' -66.5 NC_005261.1 + 14224 0.76 0.104843
Target:  5'- aCGCGcgCGGUGaagacCGCGCCgGCCGgGGCCu -3'
miRNA:   3'- -GCGCa-GCCGCa----GCGCGGgCGGC-CCGG- -5'
23591 3' -66.5 NC_005261.1 + 60382 0.76 0.107161
Target:  5'- -uCGUUGGCGaggUGCGCCuccauggCGCCGGGCCg -3'
miRNA:   3'- gcGCAGCCGCa--GCGCGG-------GCGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 4478 0.76 0.107422
Target:  5'- uCGCG-CGGCGcCGCggcguaGCCUGCgCGGGCCc -3'
miRNA:   3'- -GCGCaGCCGCaGCG------CGGGCG-GCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 74955 0.76 0.109528
Target:  5'- gCGCGcUCGGCGcgcucgaggccgCGCGCCCgcGCCGGGUg -3'
miRNA:   3'- -GCGC-AGCCGCa-----------GCGCGGG--CGGCCCGg -5'
23591 3' -66.5 NC_005261.1 + 76711 0.75 0.115522
Target:  5'- -uCGUCGGCGUCGUcaacuGCCCGCagcuGGCCg -3'
miRNA:   3'- gcGCAGCCGCAGCG-----CGGGCGgc--CCGG- -5'
23591 3' -66.5 NC_005261.1 + 70645 0.75 0.115522
Target:  5'- cCGCGgcgcugagguUCGGCGcCGCGgCCG-CGGGCCg -3'
miRNA:   3'- -GCGC----------AGCCGCaGCGCgGGCgGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 43270 0.75 0.115522
Target:  5'- uGCGUUcggGGCGUCGCGgCCGCCuuucccgcgggGGGCg -3'
miRNA:   3'- gCGCAG---CCGCAGCGCgGGCGG-----------CCCGg -5'
23591 3' -66.5 NC_005261.1 + 53718 0.75 0.115522
Target:  5'- cCGCGgccagCuGCGgCGCGCCCGCaCGGGCg -3'
miRNA:   3'- -GCGCa----GcCGCaGCGCGGGCG-GCCCGg -5'
23591 3' -66.5 NC_005261.1 + 11869 0.75 0.116644
Target:  5'- aGCGUCagcugcggGGCGagcccgcccgcacgCGCGCCCGCCgcGGGCCc -3'
miRNA:   3'- gCGCAG--------CCGCa-------------GCGCGGGCGG--CCCGG- -5'
23591 3' -66.5 NC_005261.1 + 101830 0.75 0.117209
Target:  5'- gCGCG-CGGCugaucuccgccgCGCGCCCGCCGGccGCCu -3'
miRNA:   3'- -GCGCaGCCGca----------GCGCGGGCGGCC--CGG- -5'
23591 3' -66.5 NC_005261.1 + 88140 0.75 0.118346
Target:  5'- uCGCGcCGcGCGgggGCGCCCcggccgcgcaGCCGGGCCg -3'
miRNA:   3'- -GCGCaGC-CGCag-CGCGGG----------CGGCCCGG- -5'
23591 3' -66.5 NC_005261.1 + 113044 0.75 0.118346
Target:  5'- gCGCG-CGGCGUggCGCGCCaccgcuCGCUGGGCa -3'
miRNA:   3'- -GCGCaGCCGCA--GCGCGG------GCGGCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.